View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_low_82 (Length: 218)

Name: NF15927_low_82
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_low_82
NF15927_low_82
[»] chr6 (6 HSPs)
chr6 (20-177)||(7226029-7226186)
chr6 (20-176)||(7206958-7207114)
chr6 (22-176)||(7239692-7239846)
chr6 (38-125)||(7242060-7242147)
chr6 (91-119)||(6757632-6757660)
chr6 (91-119)||(6775779-6775807)
[»] chr2 (3 HSPs)
chr2 (20-116)||(22609680-22609776)
chr2 (38-86)||(22609340-22609388)
chr2 (38-86)||(22609459-22609507)
[»] chr8 (2 HSPs)
chr8 (88-123)||(27663261-27663296)
chr8 (88-122)||(30442960-30442994)
[»] chr7 (1 HSPs)
chr7 (88-122)||(19592189-19592223)
[»] scaffold0299 (1 HSPs)
scaffold0299 (91-119)||(12433-12461)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 7226186 - 7226029
Alignment:
Q  20 taaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7226186 taaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaa 7226087  T
Q  120 atataactgatttgagacgcattgaagaaggtaaatgttatcataaacatatacacta 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7226086 atataactgatttgagacgcattgaagaaggtaaatgttatcataaacatatacacta 7226029  T

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Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 7207114 - 7206958
Alignment:
Q  20 taaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7207114 taaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaa 7207015  T
Q  120 atataactgatttgagacgcattgaagaaggtaaatgttatcataaacatatacact 176  Q
    |||||||||||||||||  |||| |||||||||| ||||||||||||||||| ||||    
T  7207014 atataactgatttgagatacatttaagaaggtaattgttatcataaacatatgcact 7206958  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 7239846 - 7239692
Alignment:
Q  22 aaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaaat 121  Q
    |||| |||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||| |||||||||||    
T  7239846 aaaaaacttggcttacagatcatcatttatgacatgatcaaatatttcttccatgctgctctgcagaaatcttcgatgaatgtaatttatttgattaaat 7239747  T
Q  122 ataactgatttgagacgcattgaagaaggtaaatgttatcataaacatatacact 176  Q
    ||||||||||||||| |||||||| | ||||| |||||| |||||||||||||||    
T  7239746 ataactgatttgagaggcattgaacagggtaagtgttatgataaacatatacact 7239692  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 7242147 - 7242060
Alignment:
Q  38 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcga-cgagtgtaatttctttgattaaatataa 125  Q
    ||||||| || |||||||||||||||| ||| ||||||| ||||||||| |||  ||| | ||||||| ||||||||||||||| ||||    
T  7242147 ggatcatgatatatgacatgatcaaatcttt-atccatgttgctctgcaaaaaaattccagcgagtgtgatttctttgattaaacataa 7242060  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 6757660 - 6757632
Alignment:
Q  91 tcttcgacgagtgtaatttctttgattaa 119  Q
    |||||||||||||||||||||||||||||    
T  6757660 tcttcgacgagtgtaatttctttgattaa 6757632  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 6775807 - 6775779
Alignment:
Q  91 tcttcgacgagtgtaatttctttgattaa 119  Q
    |||||||||||||||||||||||||||||    
T  6775807 tcttcgacgagtgtaatttctttgattaa 6775779  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 22609776 - 22609680
Alignment:
Q  20 taaaaagactttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgat 116  Q
    |||||| |||| | ||| ||||||| ||||||||||||||||||| ||| ||||||  ||||||||| ||| || | |||| | | |||||||||||    
T  22609776 taaaaaaacttggtttatggatcatgatttatgacatgatcaaatcttttatccattttgctctgcaaaaaactccaacgactatgatttctttgat 22609680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 22609340 - 22609388
Alignment:
Q  38 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgca 86  Q
    ||||||| ||||||||||||||||||| ||| ||||||| |||| ||||    
T  22609340 ggatcatgatttatgacatgatcaaatattttatccatgttgctttgca 22609388  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 22609507 - 22609459
Alignment:
Q  38 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgca 86  Q
    |||||||  |||||||||||||||||| ||| ||||||| |||||||||    
T  22609507 ggatcatggtttatgacatgatcaaatcttttatccatgttgctctgca 22609459  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 27663296 - 27663261
Alignment:
Q  88 aaatcttcgacgagtgtaatttctttgattaaatat 123  Q
    |||||| |||||||||||||||||||||||||||||    
T  27663296 aaatctccgacgagtgtaatttctttgattaaatat 27663261  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 30442994 - 30442960
Alignment:
Q  88 aaatcttcgacgagtgtaatttctttgattaaata 122  Q
    ||||||||||||||||| |||||||||||||||||    
T  30442994 aaatcttcgacgagtgtgatttctttgattaaata 30442960  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 19592189 - 19592223
Alignment:
Q  88 aaatcttcgacgagtgtaatttctttgattaaata 122  Q
    ||||||||||||||||| |||||||||||||||||    
T  19592189 aaatcttcgacgagtgtgatttctttgattaaata 19592223  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 12433 - 12461
Alignment:
Q  91 tcttcgacgagtgtaatttctttgattaa 119  Q
    |||||||||||||||||||||||||||||    
T  12433 tcttcgacgagtgtaatttctttgattaa 12461  T

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