View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_84 (Length: 216)
Name: NF15927_low_84
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_84 |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 28859865 - 28860050
Alignment:
| Q |
10 |
acatcatcacaggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
109 |
Q |
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| T |
28859865 |
acatcttcgcaggcggggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
28859964 |
T |
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| Q |
110 |
acccgaattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattctggtcaggaagattttgctcacct |
195 |
Q |
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| T |
28859965 |
acccggattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattctagtcaggaagattttgctcacct |
28860050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 18119016 - 18119205
Alignment:
| Q |
10 |
acatcatcacaggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
109 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18119016 |
acatcttcacgggccgggaaattggtctggaatttggagacttaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
18119115 |
T |
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| Q |
110 |
acccgaattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattctggtcaggaagattttgctcacctgttc |
199 |
Q |
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| T |
18119116 |
acccggattagactacattataaaggggttcgttgtccaactgactgtgtaaattgcaattctggtcagaaagattttgctcacctgttc |
18119205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 10770292 - 10770481
Alignment:
| Q |
10 |
acatcatcacaggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
109 |
Q |
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| T |
10770292 |
acatcttcgcaggtcgggcaattggtctggaatttggagactcaaagttccaccaaaagtgaagaacttggtttggcatatgtgtcgaggtttttcgccc |
10770391 |
T |
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| Q |
110 |
acccgaattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattctggtcaggaagattttgctcacctgttc |
199 |
Q |
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| T |
10770392 |
acccggattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattttggtcaggaagattttgctcatctgttc |
10770481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 13272 - 13461
Alignment:
| Q |
10 |
acatcatcacaggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
109 |
Q |
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| T |
13272 |
acatcttcgcaggccgggaaattggtctagaatttggagattcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcaatgtgttttgccc |
13371 |
T |
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| Q |
110 |
acccgaattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattctggtcaggaagattttgctcacctgttc |
199 |
Q |
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| T |
13372 |
acccggattagactacatgataaaggggttcattgtccaactgactgtgtaaattgaaattctggtcaggaagattttgctcacctgttc |
13461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 17753318 - 17753129
Alignment:
| Q |
10 |
acatcatcacaggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgccc |
109 |
Q |
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| T |
17753318 |
acatcttcacaggccgagaaattggtttggaatttggagactcaaagtcccaccaaaagtgaaaaacttggtttggcgtatgtgtcgaggtgttttgccc |
17753219 |
T |
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| Q |
110 |
acccgaattagactacatgataaaggggttcattgtccaactgactgtgtaaattgcaattctggtcaggaagattttgctcacctgttc |
199 |
Q |
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| T |
17753218 |
acccagattagaccacatgataaaggggttcattgtccaactgactgtgtaaattggaattctggtcaggatgattttgctcacctgttc |
17753129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 22738784 - 22738653
Alignment:
| Q |
18 |
acaggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccgaat |
117 |
Q |
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| T |
22738784 |
acaggccaggcaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggat |
22738685 |
T |
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| Q |
118 |
tagactacatgataaaggggttcattgtccaa |
149 |
Q |
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| T |
22738684 |
tagactacatgataaaggggttcattgtccaa |
22738653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 22737387 - 22737333
Alignment:
| Q |
145 |
tccaactgactgtgtaaattgcaattctggtcaggaagattttgctcacctgttc |
199 |
Q |
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| T |
22737387 |
tccaactgactgtgtaaattgctattctggtcgagaagagtttgctcatctgttc |
22737333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 27492349 - 27492493
Alignment:
| Q |
20 |
aggccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccgaatta |
119 |
Q |
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| T |
27492349 |
aggccgggctattggtctgaaatttggagacttaaagtcccacccaaggtgaagaacttggtttggcgaatgtgtcggagttgtttgccaacttgggtta |
27492448 |
T |
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| Q |
120 |
gactacatgataaaggggttcattgtccaactgactgtgtaaattg |
165 |
Q |
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| T |
27492449 |
cacttcatgataaa-gggttcaatgtccaactgactatgttaattg |
27492493 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 27457259 - 27457332
Alignment:
| Q |
23 |
ccgggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcg |
96 |
Q |
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| T |
27457259 |
ccgggatactggtcggggatttggaaacttaaagtcccaccaaaagtcaaaaacttggtatggcgaatttgtcg |
27457332 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 20247325 - 20247390
Alignment:
| Q |
31 |
ttggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcg |
96 |
Q |
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| T |
20247325 |
ttggtctgttatttggagactgaaagttccacctaaagtaaagaatttgatttggcgaatgtgtcg |
20247390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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