View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_high_8 (Length: 403)
Name: NF15928_high_8
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_high_8 |
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| [»] scaffold0045 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 25793173 - 25793547
Alignment:
| Q |
13 |
gattatactttttctttagggggttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttca |
112 |
Q |
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| T |
25793173 |
gattatactttttctttagggggttttctggtaagtagtagtgaaacaatatagctattgtcatattaataaacttattcatgtcatgaacaagccttca |
25793272 |
T |
|
| Q |
113 |
tatatttgactggatatatattcttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793273 |
tatatttgactggatatatattcttgatcattttagggctgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcaca |
25793372 |
T |
|
| Q |
213 |
ctggaaagatggttctgcttctagttgaagcaattggtaaatttatcatttttcatacataatctgaccactaggaacnnnnnnntattatagagtttct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
25793373 |
ctggaaagatggttctgcttctagttgaagcaattggtaaatttatcatttttcatacataatctgaccactaggaacaaaaaaatattaaagagtttct |
25793472 |
T |
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| Q |
313 |
tgaaacggccgaaaatttagtaacttgcagtccttcaaaatcatgatacggagggagtataatgcttaaattttt |
387 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
25793473 |
tgaaatggccgaaaatttagtaacttgcagtccttccaaatcatgagatggagggagtataatgcttaaattttt |
25793547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 10212816 - 10213001
Alignment:
| Q |
53 |
gtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatattcttgatcattttagggtt |
152 |
Q |
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|||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||| | |
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| T |
10212816 |
gtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat-----atcattttagggct |
10212910 |
T |
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| Q |
153 |
gtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
252 |
Q |
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||||||| ||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||| || |||||||||||||| |
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| T |
10212911 |
gtgttta---------agcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctctggtcgaagcaattggtaa |
10213001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 10133715 - 10133918
Alignment:
| Q |
35 |
gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatatt |
134 |
Q |
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|||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
10133715 |
gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat- |
10133813 |
T |
|
| Q |
135 |
cttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttct |
234 |
Q |
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|| ||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| ||| ||| |
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| T |
10133814 |
----ataattttagggctgtgttt---------tagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaatatggttttgcgtct |
10133900 |
T |
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| Q |
235 |
agttgaagcaattggtaa |
252 |
Q |
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| T |
10133901 |
ggtcgaagcaattggtaa |
10133918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 10101874 - 10102078
Alignment:
| Q |
35 |
gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatatt |
134 |
Q |
| |
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|||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
10101874 |
gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat- |
10101972 |
T |
|
| Q |
135 |
cttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttct |
234 |
Q |
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|||||||||||| ||||| | |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| || |
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| T |
10101973 |
----atcattttagggctgtgt--------tctaagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctca |
10102060 |
T |
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| Q |
235 |
agttgaagcaattggtaa |
252 |
Q |
| |
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|| || ||||||||||| |
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| T |
10102061 |
ggtcgacgcaattggtaa |
10102078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 10365879 - 10365757
Alignment:
| Q |
131 |
tattcttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgc |
230 |
Q |
| |
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||||| || |||||||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| | |
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| T |
10365879 |
tattcatgctcattttagggttgcgtttatattgtcgatgcatacaaagtttattggtcaagttgtgtcaaaggagttcacaccggaaagatggttctac |
10365780 |
T |
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| Q |
231 |
ttctagttgaagcaattggtaaa |
253 |
Q |
| |
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|| ||||||||| |||||||| |
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| T |
10365779 |
gcctggttgaagcagttggtaaa |
10365757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 10136450 - 10136539
Alignment:
| Q |
163 |
tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
252 |
Q |
| |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| | || ||||||||||||||||| |
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| T |
10136450 |
tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagcaattggtaa |
10136539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 10378317 - 10378208
Alignment:
| Q |
140 |
tcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttg |
239 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| | | |||| |
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|
| T |
10378317 |
tcattttagggttgcgtttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttg |
10378218 |
T |
|
| Q |
240 |
aagcaattgg |
249 |
Q |
| |
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|||||||||| |
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|
| T |
10378217 |
aagcaattgg |
10378208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 10074981 - 10075042
Alignment:
| Q |
35 |
gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgt |
96 |
Q |
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|||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||| |
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| T |
10074981 |
gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgt |
10075042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 10136332 - 10136381
Alignment:
| Q |
60 |
aatatagctattttcatattaataaacttattcatgtcatgaacaagcct |
109 |
Q |
| |
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|||| ||||| | |||||||||||||||||||||||||||||| |||||| |
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|
| T |
10136332 |
aatacagctagtgtcatattaataaacttattcatgtcatgaataagcct |
10136381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 10075062 - 10075098
Alignment:
| Q |
194 |
tgtgtcaaaggagttcacactggaaagatggttctgc |
230 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
10075062 |
tgtgtcaaaggagttcacactggaaatatggttctgc |
10075098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 84896 - 84952
Alignment:
| Q |
196 |
tgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
84896 |
tgtcaaaggagttcacactggaaagatggttctgaggctggttgaagcaattggtaa |
84952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 84690 - 84747
Alignment:
| Q |
34 |
ggttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttatt |
91 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| ||||| | ||||||||||||||||||| |
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|
| T |
84690 |
ggttttctcgtaagtattagtgaaataatagagctagtgtcatattaataaacttatt |
84747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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