View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15928_low_1 (Length: 501)

Name: NF15928_low_1
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15928_low_1
NF15928_low_1
[»] chr6 (4 HSPs)
chr6 (1-493)||(20493547-20494039)
chr6 (3-268)||(20475734-20475999)
chr6 (71-268)||(20517630-20517833)
chr6 (329-363)||(20476069-20476103)
[»] chr1 (1 HSPs)
chr1 (88-178)||(13072237-13072327)


Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 20493547 - 20494039
Alignment:
Q  1 ccataccaggaataagtcctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493547 ccataccaggaataagtcctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaat 20493646  T
Q  101 atttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaagggaaaatttaatattcagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20493647 atttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattatcctggtgtgcaaacattgaagggaaaatttaatattcagaaa 20493746  T
Q  201 catgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggatattggaagatttgataatgatgaagctggaagacgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493747 catgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggatattggaagatttgataatgatgaagctggaagacgtt 20493846  T
Q  301 tgaatttgactgaacatgaggtttatcaagttgtgtttgttgatgctgctacttatgaagctgagtatattaaatctgttgtttgaatttctatttagat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493847 tgaatttgactgaacatgaggtttatcaagttgtgtttgttgatgctgctacttatgaagctgagtatattaaatctgttgtttgaatttctatttagat 20493946  T
Q  401 aactagattttgtaacttttgtttttattgtgtagaactatgttcttgaacaatttaaacatttaataagtgaaataagttacctttgcttct 493  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20493947 aactagcttatgtaacttttgtttttattgtgtagaactatgttcttgaacaatttaaacatttaataagtgaaataagttacctttgcttct 20494039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 20475734 - 20475999
Alignment:
Q  3 ataccaggaataagtcctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaatat 102  Q
    ||||||| |||||| ||||||||||| ||||||||||||||| |||| ||||||| ||| || || |||| ||| | || |||| |||||||||| ||||    
T  20475734 ataccagaaataagccctggtataatcttcactggtacaccaattgatatcgagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatat 20475833  T
Q  103 ttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaagggaaaatttaatattcagaaaca 202  Q
    ||||||||| |||||||  |||||||||| ||||||||||||||||||||||||| |||||| |   ||||||||  || | |||||||||| |||| ||    
T  20475834 ttgttgatagtgttattcaaaaagcttgtgttggtattggtggtcctgaaaattatcctggttttagaacattgagtggcacatttaatattgagaagca 20475933  T
Q  203 tgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggatattgg 268  Q
    || |||||||||||||||||   | || | |||||| |  |  |||||||||||||||||||||||    
T  20475934 tgaatctggatttggttataggcttggatattgtgtgaaagattctcctacttgtttggatattgg 20475999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 268
Target Start/End: Original strand, 20517630 - 20517833
Alignment:
Q  71 tagttgtgctgcatcaacaaaatggttaatatttgttgataatgttatt---ggaaaagcttgtattggtattggtggtcctgaaaattaccct---ggt 164  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||| |      ||| | | | |||||||||||||||||||||| || |||   |||    
T  20517630 tagttgtgttgaatcatcaaaatggttgatatttgttgataatgttaataacaacaaatcatttgttggtattggtggtcctgaaaactatcctcaaggt 20517729  T
Q  165 gtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggata 264  Q
       |||| |||||| ||||||||||||||| |||||  || ||||| |  || |||||| || || ||||||||||  | | |||||| ||||| |||||    
T  20517730 acacaaatattgaatggaaaatttaatattaagaaatctggatctgaaaatgcttataagtttggattttgtgttaaggaaactcctagttgttgggata 20517829  T
Q  265 ttgg 268  Q
    ||||    
T  20517830 ttgg 20517833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 20476069 - 20476103
Alignment:
Q  329 agttgtgtttgttgatgctgctacttatgaagctg 363  Q
    |||||||||||||||||||||| ||||||||||||    
T  20476069 agttgtgtttgttgatgctgcttcttatgaagctg 20476103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 13072327 - 13072237
Alignment:
Q  88 caaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaa 178  Q
    |||||||||| |||||||||||||||||||||  |||| ||||| |||||||||||||||| ||||| || |||||| |||||| ||||||    
T  13072327 caaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtggtccagaaaactatcctggtatgcaaatattgaa 13072237  T

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