View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_low_10 (Length: 324)
Name: NF15928_low_10
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 71 - 308
Target Start/End: Original strand, 29638292 - 29638529
Alignment:
| Q |
71 |
aataataataattacttaaaagataaaccattataaatgtaagcattcatgaccttgaggatttgggagtattttttaaacgatatttaggaagccaaaa |
170 |
Q |
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| T |
29638292 |
aataataataattacttaaaagataaaccattataaatgtaagcattcaagaccttgaggatttgggagtattttttaaacgatatttaggaagccaaaa |
29638391 |
T |
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| Q |
171 |
ggttttatacccactaaggttcatatgaaacgatgcgatcccttttctcccggtggagtttaattctataattcaaagtgcattggtgaaactatatata |
270 |
Q |
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| T |
29638392 |
ggttttatacccactaaggttcatatgaaacgatacgaccccttttctcccggtggagtttaattctataattcaaagtgcattggtgaaactatatata |
29638491 |
T |
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| Q |
271 |
aatgtacactatcacctcaagtcatcaagccttgtatt |
308 |
Q |
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| T |
29638492 |
aatgtacactatcacctcaagccatcaagccttgtatt |
29638529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 29636026 - 29636138
Alignment:
| Q |
198 |
aaacgatgcgatcccttttctcccggtggagtttaattctataattcaaagtgcattggtgaaactatatataaa--tgtacactatcacctcaagtcat |
295 |
Q |
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| T |
29636026 |
aaacgatgcgaccccttttctcccggtggagtttaattctctaattcaaagtgcattggtgaaactatatataaatttgtacactatcactcaaagccat |
29636125 |
T |
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| Q |
296 |
caagccttgtatt |
308 |
Q |
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| T |
29636126 |
caagccttgtatt |
29636138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 29638190 - 29638253
Alignment:
| Q |
11 |
cataggctcgtgtcgattggcctaactatttccacatatagtgaagagagaagtataaacaata |
74 |
Q |
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| T |
29638190 |
cataggctcgtgtcggttggcctaactatttccacatatagtgaagagagaagtataaacaata |
29638253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 29635796 - 29635874
Alignment:
| Q |
111 |
aagcattcatgaccttgaggatttgggagtattttttaaacgatatttaggaagccaaaaggttttatacccactaagg |
189 |
Q |
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| T |
29635796 |
aagcattgatgtccttcagaatttgggagtattatttaaacgatatttaggaagccaaaaggttttatacccactaagg |
29635874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 29646364 - 29646443
Alignment:
| Q |
198 |
aaacgatgcgatcccttttctcccggtggagttt---aattctataattcaaagtgcattggtgaaactatatataaatg |
274 |
Q |
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| T |
29646364 |
aaaccatgcgaccccttttctcccgggggagttttataattctctaattcaaagtgcattgatgaaactatatataaatg |
29646443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 29646289 - 29646350
Alignment:
| Q |
147 |
taaacgatatttaggaagcc-aaaaggttttatacccactaaggttcatatgaaacgatgcga |
208 |
Q |
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| T |
29646289 |
taaacgatatttaggaagccaaaaaggttttata-ccactaaggtttatatgaaacgatgcga |
29646350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 29635644 - 29635688
Alignment:
| Q |
11 |
cataggctcgtgtcgattggcct-aactatttccacatatagtga |
54 |
Q |
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| T |
29635644 |
cataggctcgtgtcggttggccttaactatttccacatatagtga |
29635688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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