View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_low_2 (Length: 484)
Name: NF15928_low_2
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Original strand, 22573370 - 22573827
Alignment:
| Q |
10 |
aaaatctaaaatttatttcatatcttacaagcaaaatgttcaataaaataaattacatgacaacttcaactttatccatcagaaaaagcaaaatatcatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22573370 |
aaaatctaaaatttatttcatatcttacaagcaaaatgttcaataaaacaaattacatgacaacttcaactctatccatcagaaaaagcaaaatatcatt |
22573469 |
T |
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| Q |
110 |
ctcattcaacattaaaaacaaaaagaaacactaatgggcggtttcatctgcatcatcatccactggcagctcattcaaatcgaaatctcgaacaacattt |
209 |
Q |
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| T |
22573470 |
ctcattcaacattaaaaacaaaaagaaacactaatgggcggtttcatctgcatcatcttccactggcagctcattcaaatcgaaatctcgaacaacattt |
22573569 |
T |
|
| Q |
210 |
aaccctaattcatgaggcaggttgttgttctcatctgtttcatcatcttcaccagtgttgttgttctcttcattatcatcattggaggcaggttgattgg |
309 |
Q |
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| T |
22573570 |
aaccctaattcatgaggcaggttgttgttcttatctgtttcatcatcttcaccagtgttgttgttctcttcattatcatcattggaggcaggttgattgg |
22573669 |
T |
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| Q |
310 |
aagcttgtgaattttgaatgactaggccattcggaatctttaacctcgccaccaccttgttcttttgatctctcacaattgtttcatcaacacaatgttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573670 |
aagcttgtgaattttgaatgactaggccattcggaatctttaacctcgccaccaccttgttcttttgatctctcacaattgtttcatcaacacaatgttt |
22573769 |
T |
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| Q |
410 |
taccagcacaccaccttgttctttgatcttcccattcttatccacattgcggcgaagt |
467 |
Q |
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| T |
22573770 |
taccagcacaccaccttgttctttgatcttcccattcttatccacattgcggcgaagt |
22573827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 22563871 - 22563942
Alignment:
| Q |
49 |
tcaataaaataaattacatgacaacttcaactttatccatcagaaaaagcaaaatatcattctcattcaacat |
121 |
Q |
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||||||| | || ||||||| |||||||| ||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
22563871 |
tcaataagacaatttacatggcaacttcaggtttatccatcagaaaaagctaaatatcactctc-ttcaacat |
22563942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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