View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_low_3 (Length: 455)
Name: NF15928_low_3
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_low_3 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 93 - 438
Target Start/End: Complemental strand, 80271 - 79927
Alignment:
| Q |
93 |
atcatattatatgtgttttcttccaagatattattaaatgtgaataatgcaaatcatgtgatctttttggcccacagtagaagagcattcatttctgttt |
192 |
Q |
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| T |
80271 |
atcatattatatgtgttttcttccaatatattattaaatgtgattaatgcaaatcatgtgacctttttggcccacactagaagagcattcatttctgttt |
80172 |
T |
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| Q |
193 |
cgaatttttgcctatgaatattaattagtgtatannnnnnncctagctgaagtgttaagcacgacaaggttttaggtttgactcg---------gtcaaa |
283 |
Q |
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| T |
80171 |
cgaatttttgcctacgaatattaattagtgtatatttttttcctagctgaagtgttaagcgctacaaggttttaggtttgactcgagtgaatatgtcaaa |
80072 |
T |
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| Q |
284 |
tttaacaattttgacattatcaattttgtaatgttatgattagccaaatgatataattttgatgaaattgaacaaactatattatttttccacaaatgta |
383 |
Q |
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| T |
80071 |
cttaacaattttgacattatcaattttgtaatgttatgattagccaaatgatataattttgatgtaattgaacaaactatattatttttccacaaatgta |
79972 |
T |
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| Q |
384 |
tgtgcatgttgaaaaacccttttaacaaaaatgtttatgtttgaatgtgtctcat |
438 |
Q |
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| T |
79971 |
tgtgcatgt----------ttttaacaaaaatgtttatgtttgaatgtgtctcat |
79927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 80315 - 80257
Alignment:
| Q |
16 |
aagaataattaaaactgataggcacgttttcttaaggagtcattatcatattatatgtg |
74 |
Q |
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| T |
80315 |
aagaataattaaaattgataggtacgttttcttaaggagtcattatcatattatatgtg |
80257 |
T |
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