View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_low_5 (Length: 424)
Name: NF15928_low_5
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_low_5 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 142 - 407
Target Start/End: Complemental strand, 21286153 - 21285888
Alignment:
| Q |
142 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataattcccgaatctaacctatctgcaggagctctgg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||| ||| |
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| T |
21286153 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgtaagtgtttgttctagaatgattcctgaatctaacctatcttcaggagctttgg |
21286054 |
T |
|
| Q |
242 |
atgctgtcaggtgcaatcgttgtgaatcataaaaactcgtgtaaatagatggtctatccattaaggttgaaagtccagctttatctcgacaaggaaggag |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21286053 |
atgctgtcaggtgcaatcgttgtgaatcataaaaactcgtgtaagtagatggtctatccattaaggttgaaagtccagctttatctcgacaaggaaggag |
21285954 |
T |
|
| Q |
342 |
tttcaaccatggagtaagattctctgtgcagacagattcacgcggtagtgaaccatatcttaaact |
407 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
21285953 |
tttcaaccatggagtaagattctctgtgaagacaacttcacgcggcagtgaaccatatcttaaact |
21285888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 21242319 - 21242431
Alignment:
| Q |
13 |
aaaatgaatcctttgaaccttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaaatcc----tttaagagactacaa |
108 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
21242319 |
aaaatgaatcctttgaaacttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaactcctttgtttaagagactacaa |
21242418 |
T |
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| Q |
109 |
tccattgattatg |
121 |
Q |
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||||||||||||| |
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| T |
21242419 |
tccattgattatg |
21242431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 21144537 - 21144467
Alignment:
| Q |
336 |
aaggagtttcaaccatggagtaagattctctgtgcagacagattcacgcggtagtgaaccatatcttaaac |
406 |
Q |
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| T |
21144537 |
aaggagtttcaaccatggagtaagattctctgtgcagacagcttcacgcggcagtgaaccatatcttaaac |
21144467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 21242786 - 21242828
Alignment:
| Q |
142 |
ggagagctcataccagctctctgaatatcaggctgaagtacaa |
184 |
Q |
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| T |
21242786 |
ggagagctcataccagctctctgaatatcaggctgaagtacaa |
21242828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 21156693 - 21156616
Alignment:
| Q |
19 |
aatcctttgaaccttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaaatccttt |
96 |
Q |
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| T |
21156693 |
aatcctttgaacgttgctttctctataaatgcatgcattatgcgaataagaataaacagccatttgtctaaatccttt |
21156616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 142 - 407
Target Start/End: Original strand, 4060877 - 4061142
Alignment:
| Q |
142 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataattcccgaatctaacctatctgcaggagctctgg |
241 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| || ||||||| ||||||| ||||| ||| |
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| T |
4060877 |
ggagagctcaaaccagctctctgaatatcgggctgaagtacaactgtaagtgtttgttctagaataattcctgattctaacccatctgcaagagctttgg |
4060976 |
T |
|
| Q |
242 |
atgctgtcaggtgcaatcgttgtgaatcataaaaactcgtgtaaatagatggtctatccattaaggttgaaagtccagctttatctcgacaaggaaggag |
341 |
Q |
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| T |
4060977 |
atgctgtcaggtgcaatcgttgtgaatgataaaaactcctgtaaatagatggtctatccattaaggctgaaagtccagctttatctcgacaaggaaggag |
4061076 |
T |
|
| Q |
342 |
tttcaaccatggagtaagattctctgtgcagacagattcacgcggtagtgaaccatatcttaaact |
407 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||| ||||| ||||| |||||||||||||| |
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| T |
4061077 |
tttcaaccatggagtaagattctctgtgcaaacagcttcgcgcggcagtgagccatatcttaaact |
4061142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 148 - 407
Target Start/End: Original strand, 4066056 - 4066315
Alignment:
| Q |
148 |
ctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataattcccgaatctaacctatctgcaggagctctggatgctg |
247 |
Q |
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|||||||| |||||||||| || |||||||||||||| ||| ||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||| |
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| T |
4066056 |
ctcataccggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatctgcaggagcactggatgctg |
4066155 |
T |
|
| Q |
248 |
tcaggtgcaatcgttgtgaatcataaaaactcgtgtaaatagatggtctatccattaaggttgaaagtccagctttatctcgacaaggaaggagtttcaa |
347 |
Q |
| |
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||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |
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| T |
4066156 |
tcaagtgcaatcgctgtgaatgataaaaactcccgtaaatagatggtctatccattaaggctgaaagtccagctttgtctcgacaaggaagaagtttcaa |
4066255 |
T |
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| Q |
348 |
ccatggagtaagattctctgtgcagacagattcacgcggtagtgaaccatatcttaaact |
407 |
Q |
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||||||||||||||||||| ||||||| ||| | ||| | || ||||||||||||||| |
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| T |
4066256 |
ccatggagtaagattctcttaacagacagcttcgcacggcaatgtaccatatcttaaact |
4066315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 233 - 407
Target Start/End: Original strand, 31373 - 31547
Alignment:
| Q |
233 |
gagctctggatgctgtcaggtgcaatcgttgtgaatcataaaaactcgtgtaaatagatggtctatccattaaggttgaaagtccagctttatctcgaca |
332 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
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| T |
31373 |
gagctctggatgctgtcaggtgcaatggttgtgaatgataaaaactcccgtaaatagatggtctatccattaaggctgaaagtctagctttatctcaaca |
31472 |
T |
|
| Q |
333 |
aggaaggagtttcaaccatggagtaagattctctgtgcagacagattcacgcggtagtgaaccatatcttaaact |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||| |
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| T |
31473 |
aggaaggagtttcaaccatggagtaagattctctgtgaacacagcttcacgcggcagtgaaccatatcttaaact |
31547 |
T |
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