View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_low_6 (Length: 416)
Name: NF15928_low_6
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 45659332 - 45658932
Alignment:
| Q |
17 |
agaaagttgaacccatgaagtttgtgagagtattggcagaacttggtatatcaaagtgcatcactccataaaaatatagaactaagctaaccatgtttgc |
116 |
Q |
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| T |
45659332 |
agaaagttgaacccatgaagtttgtgagagtatttgcagaacttggtatatcaaagtgcatcactccataaaaatatagaactaagctaaccatgtttgc |
45659233 |
T |
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| Q |
117 |
cacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaacatattttgcatcaaa-ttcaaatcagcaaaaaacagaaccaacaaaga |
215 |
Q |
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| T |
45659232 |
cacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaacatagtttgcatcaaaattcaaatcagcaaaaaacagaaccaacaaaga |
45659133 |
T |
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| Q |
216 |
gtttttgtttatacttcagcttaccaaaaataaacatagaagccctgaatccacctttctttctcttccattcagtgagaagcttgagttcttcagtttc |
315 |
Q |
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| T |
45659132 |
gtttttgtttatacttcagcttaccaaaaataaacatagaagccctaaatccacctttctttctcttccattcagtgagaagcttgagttcttcagtttc |
45659033 |
T |
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| Q |
316 |
ctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaaggttagaaaaatgagtgagatgaatgagtagaac |
415 |
Q |
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| T |
45659032 |
ctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaaggttagaaaaatgagtgagatgaatgagtagaac |
45658933 |
T |
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| Q |
416 |
c |
416 |
Q |
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| T |
45658932 |
c |
45658932 |
T |
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Back To:
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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 37984209 - 37984345
Alignment:
| Q |
17 |
agaaagttgaacccatgaagtttgtgagagtattggcagaacttggtatatcaaagtgcatcactccataaaaatatagaactaagctaaccatgtttgc |
116 |
Q |
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|||||||||| ||||| || ||||| | ||| |||||||| |||| | ||||||||||||||||||| ||| ||||| |||||||| |||||||||| |
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| T |
37984209 |
agaaagttgagcccataaaatttgtcaaagtgttggcagagcttgaaagatcaaagtgcatcactccaataaagtatagtactaagctcaccatgtttgt |
37984308 |
T |
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| Q |
117 |
cacaaaacccatgttgtccaatgctgacaatactaca |
153 |
Q |
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| T |
37984309 |
cacaaaacccatgttatccaatgctgacaaaactaca |
37984345 |
T |
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