View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15928_low_7 (Length: 407)
Name: NF15928_low_7
Description: NF15928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15928_low_7 |
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| [»] chr8 (4 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 41038553 - 41038145
Alignment:
| Q |
1 |
ttattgaaatttcttcatccaaatacactataaaattagagtttattcaaacttaaattactggatgatacatttttcgaacttgttttggaaaagtttt |
100 |
Q |
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| T |
41038553 |
ttattgaaatttcttcatccaaatacactataaaattagagtttattcaaacttaaattactggatgatacatttttcaaacttgttttggaaaagtttt |
41038454 |
T |
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| Q |
101 |
atagaagagaactgcgtgtagttgcgctatggaatggtaacaaagatattagttgactattgtacatttggttatgcaaaacgtgatatctgcacacttg |
200 |
Q |
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| T |
41038453 |
atagaagagaactgcgtgtagttgcgctatggaatggtgacaaagatattagtcgactattgtacatttggttatgcaaaacgtgatatctgcacacttg |
41038354 |
T |
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| Q |
201 |
gaattttgaatggttgcaatgaagtaacaaaatcaattaatagtagaaaagaataatccacattcttctaagtaaccaatgaaggaaacaatttacaccc |
300 |
Q |
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| T |
41038353 |
gaattttgaatggttgcaatgaagtaacaaaatcaattaatagtagaaaagaataatccacattcttctaagtaaccaatgaaggaaacaatttacaccc |
41038254 |
T |
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| Q |
301 |
aaatcatggattaataacac--aaagattcagaagaatgtcccttaatgaaaaaggacacaaaacacaagatgattagaaacaaacacagataagagcct |
398 |
Q |
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| T |
41038253 |
aaatcatggattaataacacaaaaagattcagaagaatgtcccttaatgaaaaaggacacaaaacacaagatgattagaaacaaacacagataagagcct |
41038154 |
T |
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| Q |
399 |
caggtcctt |
407 |
Q |
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| T |
41038153 |
caggtcctt |
41038145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 150 - 407
Target Start/End: Original strand, 32570070 - 32570327
Alignment:
| Q |
150 |
tagttgactattgtacatttggttatgcaaaacgtgatatctgcacacttggaattttgaatggttgcaatgaagtaacaaaatcaattaatagtagaaa |
249 |
Q |
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| T |
32570070 |
tagttgactataatacatttgattatgcaaaacgttatatctgcacacttggaattttgaaaggttgaaatgaagtaacaaaattaattaatagtagaaa |
32570169 |
T |
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| Q |
250 |
agaataatccacattcttctaagtaacc-aatgaaggaaacaatttacacccaaatcatggattaataacacaaagattcagaagaatgtcccttaatga |
348 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| || ||||||||| |
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| T |
32570170 |
ggaataatccacattcttctaagtgaccaaatgaaggaaacaatttacacccaaatcatggattaa-cataaaaagattcagaagaacgttccttaatga |
32570268 |
T |
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| Q |
349 |
aaaaggacacaaaacacaagatgattagaaacaaacacagataagagcctcaggtcctt |
407 |
Q |
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| T |
32570269 |
aagacgaaacaaaacacaagatgattaccaacaaacacagataagagcctcaggtcctt |
32570327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 32570010 - 32570075
Alignment:
| Q |
59 |
tactggatgatacatttttcgaacttgttttggaaaagttttatagaagagaactgcgtgtagttg |
124 |
Q |
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| T |
32570010 |
tactgcatgatacatttttcaaacttttttgggaaaagttttataaaaaagaaatgcgtgtagttg |
32570075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 32569947 - 32569984
Alignment:
| Q |
14 |
ttcatccaaatacactataaaattagagtttattcaaa |
51 |
Q |
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| T |
32569947 |
ttcatccaaatgcactataaaattagagtttattcaaa |
32569984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 150 - 407
Target Start/End: Original strand, 1615583 - 1615840
Alignment:
| Q |
150 |
tagttgactattgtacatttggttatgcaaaacgtgatatctgcacacttggaattttgaatggttgcaatgaagtaacaaaatcaattaatagtagaaa |
249 |
Q |
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| T |
1615583 |
tagttgactataatacatttgattatgcaaaacgttatatctgcacacttggaattttgaaaggttgaaatgaagtaacaaaattaattaatagtagaaa |
1615682 |
T |
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| Q |
250 |
agaataatccacattcttctaagtaacc-aatgaaggaaacaatttacacccaaatcatggattaataacacaaagattcagaagaatgtcccttaatga |
348 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| || ||||||||| |
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| T |
1615683 |
agaataatccacattcttctaagtgaccaaatgaaggaaacaatttacacccaaatcatggattaa-cataaaaagattcagaagaacgttccttaatga |
1615781 |
T |
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| Q |
349 |
aaaaggacacaaaacacaagatgattagaaacaaacacagataagagcctcaggtcctt |
407 |
Q |
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| T |
1615782 |
aagatgaaacaaaacacaagatgattaccaacaaacacagataagagcctcaggtcctt |
1615840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 1615523 - 1615588
Alignment:
| Q |
59 |
tactggatgatacatttttcgaacttgttttggaaaagttttatagaagagaactgcgtgtagttg |
124 |
Q |
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| T |
1615523 |
tactgcatgatacatttttcaaacttttttgggaaaagttttataaaagagaactgcgtgtagttg |
1615588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1615460 - 1615497
Alignment:
| Q |
14 |
ttcatccaaatacactataaaattagagtttattcaaa |
51 |
Q |
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| T |
1615460 |
ttcatccaaatgcactataaaattagagtttattcaaa |
1615497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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