View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15929_high_12 (Length: 344)
Name: NF15929_high_12
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15929_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 44017138 - 44017455
Alignment:
| Q |
1 |
aatggtggctttacttggagtcggagattaatgtagaagatgagggtgaaggtgaaggtgaaggtaataaaagactactagtttaggagagcacatgcat |
100 |
Q |
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| T |
44017138 |
aatggtgactttacttggagttggagattaatgtagaagatgagggtg------aaggtgaaggtgataaaagactactagtttaggagagcacatgcat |
44017231 |
T |
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| Q |
101 |
gatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagtggtatgtttaagaagggagataatagagatgaga |
200 |
Q |
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| T |
44017232 |
gatgcttaagtttcacacaaacgttttaaacacaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgaga |
44017331 |
T |
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| Q |
201 |
gaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgatagag |
300 |
Q |
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| T |
44017332 |
gaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgatagag |
44017431 |
T |
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| Q |
301 |
ccaaaaccaaccttgtgatgatgt |
324 |
Q |
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| T |
44017432 |
ccaaaaccaaccttgtgatgatgt |
44017455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 31037218 - 31037093
Alignment:
| Q |
98 |
catgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaag---tggtatgtttaagaagggagataatagag |
194 |
Q |
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| T |
31037218 |
catgatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagag |
31037119 |
T |
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| Q |
195 |
at--gagagaatggtcaaaaaggaat |
218 |
Q |
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| T |
31037118 |
ctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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