View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15929_high_17 (Length: 318)
Name: NF15929_high_17
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15929_high_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 34201550 - 34201857
Alignment:
| Q |
11 |
attgagatgaagtaatgacatatcagtgagtaatgataattcttgtacaagtgttccttcaaggtttgcatggtttagatctattccagcaagaactact |
110 |
Q |
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| T |
34201550 |
attgagatgaagtaatgacatatcagtgagtaatgataattcttgtacaagtgttccttcaaggtttgcatggtttagatctattccagcaagaactact |
34201649 |
T |
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| Q |
111 |
gaagtagaagctgttgtagaagttattccattttcaggatttgcacagaagattcctttatatgaacatacatttgaaccattccaagaatctagtatct |
210 |
Q |
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| T |
34201650 |
gaagtagaagctgttgtagaagttattccattttcaggatttgcacagaagattcctttatatgaacatacatttgaaccattccaagaatctagtatct |
34201749 |
T |
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| Q |
211 |
ttaaagggtcatcagtgattgcagatttccatgcttgaagaactgtgtaagctgattccatctttgatgttggagattcataggactttggattttggtt |
310 |
Q |
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| T |
34201750 |
ttaaagggtcatcagtgattgcagatttccatgcttgaagaactgtgtaagctgattccatctttgatgttggagattcataggactttggattttggtt |
34201849 |
T |
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| Q |
311 |
actattcc |
318 |
Q |
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| T |
34201850 |
actattcc |
34201857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 43030063 - 43029966
Alignment:
| Q |
154 |
cacagaagattcctttatatgaacatacatttgaaccattccaagaatctagtatctttaaagggtcatcagtgattgcagatttccatgcttgaaga |
251 |
Q |
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| T |
43030063 |
cacaaaagattcctttataagaacaaacattaggaccaacccatgtatctaaaatctttaaagggtcatcagtgattgaagatttccaagcttgaaga |
43029966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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