View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15929_high_1_N (Length: 470)
Name: NF15929_high_1_N
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15929_high_1_N |
 | |
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| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Complemental strand, 12934148 - 12933699
Alignment:
| Q |
21 |
aaaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12934148 |
aaaggattttgacaattccttcttcaaatcaccaatcatatccttgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
12934049 |
T |
|
| Q |
121 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934048 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
12933949 |
T |
|
| Q |
221 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933948 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
12933849 |
T |
|
| Q |
321 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933848 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
12933749 |
T |
|
| Q |
421 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtcc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933748 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtcc |
12933699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 28893876 - 28893839
Alignment:
| Q |
328 |
tctccatgaagaaatgcagtctttacatccatttgttc |
365 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28893876 |
tctccatgtagaaatgcagtcttcacatccatttgttc |
28893839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Complemental strand, 14177418 - 14176969
Alignment:
| Q |
21 |
aaaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177418 |
aaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
14177319 |
T |
|
| Q |
121 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14177318 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcgaatttcttataccattgtcttg |
14177219 |
T |
|
| Q |
221 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177218 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
14177119 |
T |
|
| Q |
321 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14177118 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatc |
14177019 |
T |
|
| Q |
421 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtcc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177018 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtcc |
14176969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Original strand, 28608457 - 28608906
Alignment:
| Q |
21 |
aaaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28608457 |
aaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaatgatgatgaatttg |
28608556 |
T |
|
| Q |
121 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608557 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
28608656 |
T |
|
| Q |
221 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28608657 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttcttaaatccttctggttgaaccatgtagatctcttc |
28608756 |
T |
|
| Q |
321 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28608757 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatc |
28608856 |
T |
|
| Q |
421 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtcc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608857 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtcc |
28608906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 6802395 - 6802470
Alignment:
| Q |
287 |
caaatccttctggttgaaccatgtagatctcttcatctaaatctcca-tgaagaaatgcagtctttacatccatttg |
362 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| |||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
6802395 |
caaaaccttctggttgatccatgtagatttcttcctctaaatctccatttaagaaa-gcagtctttacatccatttg |
6802470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 30947249 - 30947317
Alignment:
| Q |
288 |
aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatc |
356 |
Q |
| |
|
||||||||| ||||||| ||| || || ||||| || | |||||||||||||| |||||||||||||| |
|
|
| T |
30947249 |
aaatccttccggttgaagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatc |
30947317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 15299933 - 15299489
Alignment:
| Q |
22 |
aaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgt |
121 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15299933 |
aaggattttgacaattcatttttcaaatcaccaatcatatcctcgtcttgccccactatcaacttatcatctacatataacagaaggatgataaatttgt |
15299834 |
T |
|
| Q |
122 |
tacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttgg |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15299833 |
tacctcgaaatattttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtaaaatttcttataccattgtcttgg |
15299734 |
T |
|
| Q |
222 |
tgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
321 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299733 |
tgcttgtcttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
15299634 |
T |
|
| Q |
322 |
tctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatct |
421 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299633 |
tctaaatatccatgaag------agtctttacgtccatttgttcaagctccaaacccaagctagcaaccaatccgagtataactcgaattgaactcatct |
15299540 |
T |
|
| Q |
422 |
taacaactg--gagagaagatttcatcaaaatctattcctcgcttttgtcc |
470 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299539 |
taacaactggagagagaagatttcatcaaaatctattcctcgcttttgtcc |
15299489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
196 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
251 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
196 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
251 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
196 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
251 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
196 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
251 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 34355221 - 34355181
Alignment:
| Q |
328 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
368 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34355221 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
34355181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 50060116 - 50060080
Alignment:
| Q |
305 |
ccatgtagatctcttcatctaaatctccatgaagaaa |
341 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50060116 |
ccatgtagatctcttcctctaaatctccatgaagaaa |
50060080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 828690 - 828650
Alignment:
| Q |
328 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
368 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
828690 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
828650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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