View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15929_high_2 (Length: 451)
Name: NF15929_high_2
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15929_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 24 - 429
Target Start/End: Complemental strand, 20737153 - 20736748
Alignment:
| Q |
24 |
acatcatcatgacagatcatccccgaactggacagataataatagcgggcactcttatcaaatgctaagtagtctacatttctcaatattagataaacaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20737153 |
acatcatcatgacagatcatccccgaactggacagataataatagcgggcactcttatcaaatgctaagtagtctacatttctcaatattagataaacaa |
20737054 |
T |
|
| Q |
124 |
aacactgagtcacaaataccattatataattacagagaactaattccgtcactcaaaaaacaccctaaaacatcttattcaaaatcagagagtgatgacg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
20737053 |
aacactgagtcacaaataccattatataattacagagaactaattccgtcactcaaaaaacaccctgaaacatcttattcaaaatcagagagtgatgatg |
20736954 |
T |
|
| Q |
224 |
tccttcactgccatcaatctcaagatctttctttttcctttatgcattgaaaaatagcacattaaaagaagcttttaagatatgctactcacaccaggaa |
323 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20736953 |
tccttcactgccatcaatctcaagatctttctatttcctttatgcattgaaaaatagcacattaaaagaagcttttaagatatgctactcacaccaggaa |
20736854 |
T |
|
| Q |
324 |
tcgcatgatcaagactcttttcagccttctcaacttctgctctcaatttatcaatttcagcagtaagttcattctctttgctccataaggacctatgatg |
423 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20736853 |
tcgcatgatcaagattcttttcagccttctcaacttctgctctcaatttatcaatttcagcagtaagttcattctctttgctccataaggacctatgatg |
20736754 |
T |
|
| Q |
424 |
atgatg |
429 |
Q |
| |
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|||||| |
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| T |
20736753 |
atgatg |
20736748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 37633121 - 37632963
Alignment:
| Q |
262 |
tttatgcattgaaaaatagcacatt-aaaagaagcttttaagatatgctactcacaccaggaatcgcatgatcaagactcttttcagccttctcaacttc |
360 |
Q |
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||||||||||| ||||| |||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
37633121 |
tttatgcattggcaaataccacatttaaaagaagcttttaagatgggctacttacaccaggaattgcatgatcaagactcttttcagtcttctcaacttc |
37633022 |
T |
|
| Q |
361 |
tgctctcaatttatcaatttcagcagtaagttcattctctttgctccataaggacctat |
419 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37633021 |
tgctctcagtttatcaatttcagcagtaagttcattctctctgctccataaggacctat |
37632963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 37809190 - 37809032
Alignment:
| Q |
262 |
tttatgcattgaaaaatagcacatt-aaaagaagcttttaagatatgctactcacaccaggaatcgcatgatcaagactcttttcagccttctcaacttc |
360 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
37809190 |
tttatgcattggcaaataccacatttaaaagaagcttttaagatgggctacttacaccaggaattgcatgatcaagactcttttcagtcttctcaacttc |
37809091 |
T |
|
| Q |
361 |
tgctctcaatttatcaatttcagcagtaagttcattctctttgctccataaggacctat |
419 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
37809090 |
tgctctcagtttatcaatttcagcagtaagttcattctctctgctccataaggacctat |
37809032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 419
Target Start/End: Original strand, 50926958 - 50927092
Alignment:
| Q |
285 |
ttaaaagaagcttttaagatatgctactcacaccaggaatcgcatgatcaagactcttttcagccttctcaacttctgctctcaatttatcaatttcagc |
384 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||| ||| | | |||| ||||||| ||||| |||| |||| || || ||||||| || ||| |
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| T |
50926958 |
ttaaaagaagtttttaagatagtttactcacaccaggaattgcacgttgaagattcttttcggccttttcaagttctactttccctttatcagttatagc |
50927057 |
T |
|
| Q |
385 |
agtaagttcattctctttgctccataaggacctat |
419 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |
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|
| T |
50927058 |
cgtaagttcattctcttgagtccataaggacctat |
50927092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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