View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15929_high_4 (Length: 390)
Name: NF15929_high_4
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15929_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Original strand, 2097043 - 2097424
Alignment:
| Q |
9 |
agcagagaaaccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaatt |
108 |
Q |
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| T |
2097043 |
agcagagaaaccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaatt |
2097142 |
T |
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| Q |
109 |
ccaaatggtccacacaacaacgtgccaaactaaa-gccagaccaaaccttggtttttcttagacctaaaactcgtnnnnnnnncctcaaaaactccttca |
207 |
Q |
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| T |
2097143 |
ccaaatggttcacacaacaacgtgccaaactaaaagccagaccaaactttggtttttcttagacctaagactcgtaaaaaaaac-tcaaaaactccttca |
2097241 |
T |
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| Q |
208 |
gataaagagcctttgaaactcccacatgattaatcttcagaattgactctatttctagctagcatccgtctccatgttctcctccaaatcaatcaaccct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2097242 |
gataaagagcctttgaaactcccacatgattaatcttcagaattgactctatttctagctagcatctgtctccatgttctcctccaaatcaatcaaccct |
2097341 |
T |
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| Q |
308 |
gctttcgccatcggtgtcaaagcctgggtcgctgatccaacccagctcacggctgctcccattgacatcaaacttctgtaaac |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2097342 |
gctttcgccatcggtgtcaaagcctgggtcgctgatccaacccaggtcacggctgctcccattgacatcaaacttctgtaaac |
2097424 |
T |
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