View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15929_high_5 (Length: 381)

Name: NF15929_high_5
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15929_high_5
NF15929_high_5
[»] chr1 (6 HSPs)
chr1 (91-380)||(27481799-27482081)
chr1 (92-380)||(27488997-27489276)
chr1 (13-71)||(9316096-9316154)
chr1 (13-71)||(21814953-21815011)
chr1 (13-67)||(27048261-27048315)
chr1 (13-71)||(47294155-47294213)
[»] chr6 (7 HSPs)
chr6 (13-77)||(14118586-14118650)
chr6 (13-77)||(14122544-14122608)
chr6 (14-77)||(7826123-7826186)
chr6 (14-77)||(10800600-10800663)
chr6 (13-71)||(18765823-18765881)
chr6 (14-77)||(24908556-24908619)
chr6 (13-71)||(1051355-1051413)
[»] chr5 (2 HSPs)
chr5 (13-77)||(9335177-9335241)
chr5 (14-77)||(40821357-40821420)
[»] chr3 (5 HSPs)
chr3 (13-77)||(18866912-18866976)
chr3 (14-77)||(4675061-4675124)
chr3 (13-71)||(4501252-4501310)
chr3 (21-71)||(4506578-4506628)
chr3 (13-71)||(27900664-27900722)
[»] chr7 (6 HSPs)
chr7 (14-77)||(41542595-41542658)
chr7 (14-77)||(28442581-28442644)
chr7 (13-71)||(9701926-9701984)
chr7 (13-71)||(41454942-41455000)
chr7 (13-71)||(43364383-43364441)
chr7 (13-71)||(48455520-48455578)
[»] chr2 (3 HSPs)
chr2 (13-77)||(33033885-33033949)
chr2 (14-77)||(44611378-44611441)
chr2 (13-71)||(43669907-43669966)
[»] chr8 (4 HSPs)
chr8 (9-71)||(44245932-44245994)
chr8 (13-71)||(9906936-9906994)
chr8 (13-59)||(38657391-38657437)
chr8 (30-71)||(5064045-5064086)
[»] scaffold0045 (2 HSPs)
scaffold0045 (13-77)||(2768-2833)
scaffold0045 (13-77)||(9150-9215)
[»] scaffold0265 (1 HSPs)
scaffold0265 (13-71)||(17798-17856)
[»] chr4 (2 HSPs)
chr4 (13-71)||(13568165-13568223)
chr4 (13-71)||(667701-667759)
[»] scaffold0291 (1 HSPs)
scaffold0291 (13-71)||(1736-1794)
[»] scaffold0012 (1 HSPs)
scaffold0012 (13-71)||(202536-202594)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 91 - 380
Target Start/End: Original strand, 27481799 - 27482081
Alignment:
Q  91 ctagttacaaacccctttccacttaaagcaatagttaccattgttcttaaacacannnnnnn--attaaaaatttgaaatgaggaaaatcattattattt 188  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  27481799 ctagttacaaatccctttccacttaaagcaataattaccattgttcttaaacacatttttttttattaaaaatttgaaatgaggaaaatcattattattt 27481898  T
Q  189 aaaacggagcacaaaaacatttaacaat---cccagtgtgatttgaactctttctattnnnnnnncacctaatgttgacacgacacgttcaatactatat 285  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||       |||||||||||            ||||||||||||    
T  27481899 aaaacggagcacaaaaacatttaacaatgatcccagtgtgatttgaactctttctattgagaaaacacctaatgtt------------tcaatactatat 27481986  T
Q  286 atcatgaagaaatcatgcattaaacaattacaaatcgtaggaatatgatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatat 380  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481987 atcatgaagaaatcatgcattaaacaattacaaatcataggaatatgatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatat 27482081  T

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Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 92 - 380
Target Start/End: Original strand, 27488997 - 27489276
Alignment:
Q  92 tagttacaaacccctttccacttaaagcaatagttaccattgttcttaaacacannnnnnnattaaaaatttgaaatgaggaaaatcattattatttaaa 191  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  27488997 tagttacaaaccgctttgcacttaaagcaatagttaccattgttcttaaacacatttttttattaaaaatttgaaatgaggaaaatcattattatttaaa 27489096  T
Q  192 acggagcacaaaaacatttaaca---atcccagtgtgatttgaactctttctattnnnnnnncacctaatgttgacacgacacgttcaatactatatatc 288  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||       ||||||||||            ||||||||||||||||    
T  27489097 acggagcacaaaaacatttaacaatgatcccagtgtgatttgaactctttctattgagaaaacacctaatgt------------ttcaatactatatatc 27489184  T
Q  289 atgaagaaatcatgcattaaacaattacaaatcgtaggaatatgatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatat 380  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27489185 atgaataaatcatgcattaaacaattacaaatcataggaatataatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatat 27489276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 9316154 - 9316096
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  9316154 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 9316096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 21815011 - 21814953
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  21815011 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 21814953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27048315 - 27048261
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatac 67  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  27048315 aatatgtgataatatcaattgataattaggatctccaacactaatccgagaatac 27048261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 47294213 - 47294155
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||  ||||||||||||  |||||||||||    
T  47294213 aatatgtgataatatcaattgataattagaattcgcaacactaatcttagaatacgtat 47294155  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14118586 - 14118650
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  14118586 aatatgtgataatatcaattgataattaggatctgcaacactaatccgagaatatgtatgaatag 14118650  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14122544 - 14122608
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  14122544 aatatgtgataatatcaattgataattaggatctgcaacactaatccgagaatatgtatgaatag 14122608  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 7826186 - 7826123
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  7826186 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 7826123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10800600 - 10800663
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  10800600 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 10800663  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 18765881 - 18765823
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  18765881 aatatgtgataatatcaattgataattagaatccgcaacactaatccaagaatacgtat 18765823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 24908619 - 24908556
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| |||||||||||| ||| ||||||| |||||||||||||| ||||||| |||||||||    
T  24908619 atatgtgataatatcaattaatagttaggatttgcaacactaatccgagaatacatatgaatag 24908556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 1051413 - 1051355
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||| |||||| ||||    
T  1051413 aatatgtgataatatcaattgataattagaatctgcaaaactaatcctagaatatgtat 1051355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 9335177 - 9335241
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  9335177 aatatgtgataatatcaattgataattaggatatgcaacactaatccgagaatacgtatgaatag 9335241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 40821357 - 40821420
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  40821357 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 40821420  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 18866976 - 18866912
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  18866976 aatatgtgataatatcaattgataattaggatctgcaatactaatccgagaatacgtatgaatag 18866912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 4675124 - 4675061
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  4675124 atatgtgataatatcaattgataattaagatctgcaacactaatccgagaatacgtatgaatag 4675061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 4501310 - 4501252
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  4501310 aatatgtgataatatcaattgataattagaatccgcaacactaatcctagaatacgtat 4501252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 4506628 - 4506578
Alignment:
Q  21 ataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  4506628 ataatatcaattgataattagaatccgcaacactaatcctagaatacgtat 4506578  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 27900722 - 27900664
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  27900722 aatatgtgataatatcaattgataattagaatacacaacactaatccgagaatacgtat 27900664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 41542658 - 41542595
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  41542658 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 41542595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 28442644 - 28442581
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  28442644 atatgtgataatatcaattgataattaagatatgcaacactaatccgagaatacatatgaatag 28442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 9701984 - 9701926
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  9701984 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 9701926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 41454942 - 41455000
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| |||||| |||||| |||||||||||    
T  41454942 aatatgtgataatatcaattgataattagaatccgcaacattaatcctagaatacgtat 41455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 43364441 - 43364383
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  43364441 aatatgtgataatatcacttgataattagaatccgcaacactaatccaagagtacgtat 43364383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 48455578 - 48455520
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||| ||||||||| ||| ||| ||||||||| |||||||||||    
T  48455578 aatatgtgataatatcaatcgataattagaatccgcatcactaatccgagaatacgtat 48455520  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 33033949 - 33033885
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  33033949 aatatgtgataatatcaattgataattaggatcggcaacactaatccgagaatatgtatgaatag 33033885  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 44611441 - 44611378
Alignment:
Q  14 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 77  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  44611441 atatgtgataatatcaattgataattaggatttgcaacactaatccgagaatacatatgaatag 44611378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 43669966 - 43669907
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacac-taatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| |||||| |||||||||||    
T  43669966 aatatgtgataatatcaattgataattagaatccgcaacacttaatccgagaatacgtat 43669907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 44245932 - 44245994
Alignment:
Q  9 gaagaatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  44245932 gaagaatatgtgataatatcaattgatagttagaatccgcaacactaatccaagaatacgtat 44245994  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 9906936 - 9906994
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  9906936 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 9906994  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 38657437 - 38657391
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatcc 59  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  38657437 aatatgtgataatatcaattgataattagaatccgcaacactaatcc 38657391  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 5064045 - 5064086
Alignment:
Q  30 attgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    |||||||||||| ||| ||||||||||||| |||||||||||    
T  5064045 attgataattagaatccgcaacactaatccgagaatacgtat 5064086  T

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Target: scaffold0045 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 2768 - 2833
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacact-aatccaagaatacgtatgaatag 77  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  2768 aatatgtgataatatcaattgataattaggatccgcaacactaaatccgagaatacgtatgaatag 2833  T

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Target: scaffold0045; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 9150 - 9215
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacact-aatccaagaatacgtatgaatag 77  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  9150 aatatgtgataatatcaattgataattaggatccgcaacactaaatccgagaatacgtatgaatag 9215  T

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Target: scaffold0265 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 17798 - 17856
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  17798 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 17856  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 13568223 - 13568165
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  13568223 aatatgtgataatatcaattgataattagaatccgcaacactaatcctagaatacgtat 13568165  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 667701 - 667759
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||  |||  |||||||||||| |||||||||||    
T  667701 aatatgtgataatatcaattgataattataatccacaacactaatccgagaatacgtat 667759  T

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Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 1736 - 1794
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  1736 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagtatacgtat 1794  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 202594 - 202536
Alignment:
Q  13 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 71  Q
    ||||||| |||||| ||||||| |||||| ||| ||||| ||||||| |||||||||||    
T  202594 aatatgtgataataccaattgagaattagaatccgcaacgctaatccgagaatacgtat 202536  T

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