View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15929_high_6 (Length: 367)

Name: NF15929_high_6
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15929_high_6
NF15929_high_6
[»] chr5 (3 HSPs)
chr5 (2-358)||(9102701-9103058)
chr5 (164-203)||(27368597-27368636)
chr5 (170-202)||(470001-470033)
[»] chr6 (10 HSPs)
chr6 (32-225)||(22086056-22086251)
chr6 (57-215)||(21968182-21968340)
chr6 (57-211)||(22206838-22206992)
chr6 (32-211)||(18979616-18979797)
chr6 (32-211)||(18990968-18991149)
chr6 (57-211)||(20236013-20236167)
chr6 (57-211)||(22129997-22130151)
chr6 (32-211)||(18995691-18995872)
chr6 (57-211)||(20083912-20084066)
chr6 (32-211)||(24386916-24387097)
[»] scaffold0007 (1 HSPs)
scaffold0007 (57-211)||(7159-7313)
[»] scaffold0074 (1 HSPs)
scaffold0074 (57-211)||(49614-49768)
[»] chr1 (3 HSPs)
chr1 (32-132)||(47593033-47593135)
chr1 (57-132)||(47607325-47607400)
chr1 (166-201)||(47698490-47698525)
[»] chr8 (1 HSPs)
chr8 (74-133)||(10401677-10401736)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 2 - 358
Target Start/End: Original strand, 9102701 - 9103058
Alignment:
Q  2 ttaacatactaggaggaattgctcggagaatttatttgcatgaactatctcgtctaagttatacatagcgatctcaaacctagtaatattccattagctg 101  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102701 ttaacatgctaggaggaattgctcagagaatttatttgcatgaactatctcgtctaagttatacatagcgatctcaaacctagtaatattccattagctg 9102800  T
Q  102 aaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagt 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  9102801 aaaatatgactcctaaaattttagattttggtttggctcaaattgacaaagcaaatcaagacgaaggaagtacaaatagaattgttggagcatagtaagt 9102900  T
Q  202 tttgaatgttcactcttttgttatattttttgagttcttctcaattaaggtacatttcagttaaattaatattg-ttttttaatagagtggctaaaatat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9102901 tttgaatgttcactcttttgttatattttttgagttcttctcaattaaggtacatttcagttaaattaatattgtttttttaatagagtggctaaaatat 9103000  T
Q  301 gtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattctt 358  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  9103001 gtctccagaatatgtgatgtatgaacagatttctgaaaaataggacatttatattctt 9103058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 27368636 - 27368597
Alignment:
Q  164 gaaggaagtacaaatagaattgttggaacatagtaagttt 203  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  27368636 gaaggaagtacaaatagaatcgttggaacctagtaagttt 27368597  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 470033 - 470001
Alignment:
Q  170 agtacaaatagaattgttggaacatagtaagtt 202  Q
    ||||||||||||||||| |||||||||||||||    
T  470033 agtacaaatagaattgtgggaacatagtaagtt 470001  T

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Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 22086251 - 22086056
Alignment:
Q  32 tttatttgcatgaactatctcgtct--aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattt 129  Q
    |||||||||||||||  ||||| ||  ||||||||||| | ||||||||||| |||||||||| ||||| ||||||||||| ||||| ||||| ||||||    
T  22086251 tttatttgcatgaacattctcgactcaaagttatacatcgtgatctcaaaccaagtaatattctattagatgaaaatatgattcctagaatttcagattt 22086152  T
Q  130 tggtttgactcaaattgacaaagcaagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgttcactcttttgttat 225  Q
    ||||||| | | ||| | | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||    
T  22086151 tggtttggcacgaatggtcgaaataagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttaaatgtttactactttgttat 22086056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 57 - 215
Target Start/End: Complemental strand, 21968340 - 21968182
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||| | |  || | | ||  |||    
T  21968340 aagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttggtttggcacggatggtcgaaataag 21968241  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgttcact 215  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  21968240 tcaagaggaaggaagtacaaatagaattgttggaacatagtaagtttcaaatgttcact 21968182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 22206838 - 22206992
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||| | |||||||||||||| ||||||| ||||| ||||||||||| |||||||||||  |||||||||||| ||| |||||   ||  |||    
T  22206838 aagttatacatcgggatctcaaacctagcaatattctattagatgaaaatatgattcctaaaatttctgattttggtttggctcgaattgttgaaataag 22206937  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||    
T  22206938 tcaagacgagggaagtacaaatagaatagttggaacattgtaagttttgaatgtt 22206992  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 18979797 - 18979616
Alignment:
Q  32 tttatttgcatgaactatctcgtct--aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattt 129  Q
    |||||||||||||||  ||||| ||  ||||||||||| | ||| |||||||||| ||||||| |||||  |||||||||| ||||||||||| ||||||    
T  18979797 tttatttgcatgaacattctcgactcaaagttatacatcgggatgtcaaacctagcaatattctattagacgaaaatatgattcctaaaatttcagattt 18979698  T
Q  130 tggtttgactcaaattgacaaagcaagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    ||||||| ||| |||||   ||  ||||||||| || ||||||||| |||||||||||||||||| ||||||||||||||||    
T  18979697 tggtttggctcgaattgttgaaataagtcaagatgagggaagtacagatagaattgttggaacattgtaagttttgaatgtt 18979616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 18991149 - 18990968
Alignment:
Q  32 tttatttgcatgaactatctcgtct--aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattt 129  Q
    |||||||||||||||  ||||| ||  ||||||||||| | |||||||||||||| ||||||| |||||  |||||||||| ||||||||||| ||||||    
T  18991149 tttatttgcatgaacattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttcagattt 18991050  T
Q  130 tggtttgactcaaattgacaaagcaagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    ||||||| ||| ||||    ||  ||||||||| || ||||||||| |||||||||||||||||| ||||||||||||||||    
T  18991049 tggtttggctcgaattattgaaataagtcaagatgagggaagtacagatagaattgttggaacattgtaagttttgaatgtt 18990968  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 20236167 - 20236013
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||| | |||||||||||||| ||||||| |||||  |||||||||| |||||||||||  |||||||||||| ||| |||||   ||  |||    
T  20236167 aagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttctgattttggtttggctcgaattgttgaaataag 20236068  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||||||||    
T  20236067 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgtt 20236013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 22130151 - 22129997
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||| | |||||||||||||| ||||||| |||||  |||||||||| |||||||||||  |||||||||||| ||| |||||   ||  |||    
T  22130151 aagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttctgattttggtttggctcgaattgttgaaataag 22130052  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||||||||    
T  22130051 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgtt 22129997  T

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Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 18995872 - 18995691
Alignment:
Q  32 tttatttgcatgaactatctcgtctaa--gttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattt 129  Q
    |||||||||||||||  ||||| ||||  ||||||||| | |||||||||||||| ||||||| ||||   |||||||||| ||||||||||| ||||||    
T  18995872 tttatttgcatgaacattctcgactaaaagttatacatcgggatctcaaacctagcaatattctattatacgaaaatatgattcctaaaatttcagattt 18995773  T
Q  130 tggtttgactcaaattgacaaagcaagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    ||||||| ||| |||||   ||   |||||||| || |||| |||||||||||||| |||||||| ||||||||||||||||    
T  18995772 tggtttggctcgaattgttgaaattagtcaagatgagggaaatacaaatagaattgctggaacattgtaagttttgaatgtt 18995691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 20084066 - 20083912
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||  | |||||||||||||| ||||||| |||||  |||||||||| | ||||||||| ||||||||||||| ||| |||||   ||  |||    
T  20084066 aagttatacaccgggatctcaaacctagcaatattctattagacgaaaatatgattactaaaatttcagattttggtttggctcgaattgttgaaataag 20083967  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    |||||| || ||||||||| |||||||||||||||||| ||||||||||||||||    
T  20083966 tcaagatgagggaagtacagatagaattgttggaacattgtaagttttgaatgtt 20083912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 24386916 - 24387097
Alignment:
Q  32 tttatttgcatgaactatctcgtct--aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattt 129  Q
    |||||||||||||||  ||||| ||  ||||||||||| |  ||||||||||||| ||||||| |||||  |||||||||| | ||||||||| | ||||    
T  24386916 tttatttgcatgaacattctcgacttaaagttatacatcggaatctcaaacctagcaatattctattagacgaaaatatgatttctaaaatttcatattt 24387015  T
Q  130 tggtttgactcaaattgacaaagcaagtcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    || |||| ||| |||||   ||  || |||| | || ||||||||| |||||||||||||||||| ||||||||||||||||    
T  24387016 tgttttggctcgaattgttgaaataattcaatatgagggaagtacagatagaattgttggaacattgtaagttttgaatgtt 24387097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 7159 - 7313
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||| | |||||||||||||| ||||||| |||||  |||||||||| ||||||||||| ||||||||||||| |||  ||||   ||  |||    
T  7159 aagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttcagattttggtttggctcggattgttgaaataag 7258  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    |||||| || |||| |||||||||||||| |||||||||||||||||||||||||    
T  7259 tcaagatgagggaaatacaaatagaattgctggaacatagtaagttttgaatgtt 7313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 49614 - 49768
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttgactcaaattgacaaagcaag 156  Q
    ||||||||||| | |||||||||||||| ||||||| |||    |||||||||| ||||||||||| ||||||||||||| ||| |||||   ||   ||    
T  49614 aagttatacatcgggatctcaaacctagcaatattctattgaacgaaaatatgattcctaaaatttcagattttggtttggctcgaattgttgaaattag 49713  T
Q  157 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttgaatgtt 211  Q
    |||||| || |||| |||||||||||||| |||||||| ||||||||||||||||    
T  49714 tcaagatgagggaaatacaaatagaattgctggaacattgtaagttttgaatgtt 49768  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 47593033 - 47593135
Alignment:
Q  32 tttatttgcatgaactatctcgtct--aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattt 129  Q
    ||||||||||||||   ||||||||  ||||||||||| | |||||||||||||||||| ||| | | | ||||||||||| ||||||||| | ||||||    
T  47593033 tttatttgcatgaatattctcgtctcaaagttatacatcgggatctcaaacctagtaatgttctactggatgaaaatatgaatcctaaaatatcagattt 47593132  T
Q  130 tgg 132  Q
    |||    
T  47593133 tgg 47593135  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 47607325 - 47607400
Alignment:
Q  57 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttgg 132  Q
    ||||||||||| | ||||| |||||||||||||||  ||||| |||| |||||| ||||||||| | |||||||||    
T  47607325 aagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttgg 47607400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 47698490 - 47698525
Alignment:
Q  166 aggaagtacaaatagaattgttggaacatagtaagt 201  Q
    ||||||||||||||||||||||||||||||||||||    
T  47698490 aggaagtacaaatagaattgttggaacatagtaagt 47698525  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 10401736 - 10401677
Alignment:
Q  74 ctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggt 133  Q
    ||||||||||||||||||  ||||| ||||||||||| ||| ||||| | ||||||||||    
T  10401736 ctcaaacctagtaatattttattagatgaaaatatgattccaaaaatatcagattttggt 10401677  T

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