View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15929_high_7 (Length: 361)

Name: NF15929_high_7
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15929_high_7
NF15929_high_7
[»] chr3 (14 HSPs)
chr3 (10-361)||(9336556-9336907)
chr3 (10-359)||(9329852-9330201)
chr3 (33-281)||(9395298-9395549)
chr3 (17-110)||(41980877-41980970)
chr3 (11-112)||(9756397-9756498)
chr3 (10-110)||(41985644-41985744)
chr3 (10-107)||(9494811-9494908)
chr3 (11-111)||(9695615-9695715)
chr3 (10-110)||(9343861-9343961)
chr3 (10-110)||(9407382-9407482)
chr3 (10-110)||(9448330-9448430)
chr3 (31-110)||(9485969-9486048)
chr3 (31-110)||(13864241-13864320)
chr3 (10-111)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (35-119)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (31-118)||(7025793-7025880)
chr6 (12-119)||(7041514-7041621)
chr6 (31-118)||(7029850-7029937)
chr6 (31-121)||(7012857-7012947)
chr6 (31-121)||(9170854-9170944)
chr6 (30-110)||(7046875-7046955)
chr6 (31-121)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (10-54)||(4439876-4439920)
chr1 (10-46)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (10-51)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 9336556 - 9336907
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336556 agcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 9336655  T
Q  110 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9336656 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttattttgcccaccaaacaccggct 9336755  T
Q  210 cagcgatcaaatgagtggtcaaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggccatcctttaaaaacacaagcatttcctcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336756 cagcgatcaaatgagtggtcaaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggccatcctttaaaaacacaagcatttcctcc 9336855  T
Q  310 atgagaggttggcatgttgggtatcatggtccaactgtcgtccccacaacaa 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336856 atgagaggttggcatgttgggtatcatggtccaactgtcgtccccacaacaa 9336907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 9329852 - 9330201
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  9329852 agcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatca 9329951  T
Q  110 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggct 209  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  9329952 atccatacaggaacacgataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttacttttcccaccaaacaccggct 9330051  T
Q  210 cagcgatcaaatgagtggtcaaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggccatcctttaaaaacacaagcatttcctcc 309  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||  ||||||||||||||| ||||||||||    
T  9330052 cagcgatcaaatgagtggttaaatccggtccaatcatgaaagtccgaccagttttgtctacaacacaaggccgccctttaaaaacacaaacatttcctcc 9330151  T
Q  310 atgagaggttggcatgttgggtatcatggtccaactgtcgtccccacaac 359  Q
    ||| ||| ||| ||||||||| ||  | |||||||| |||||||||||||    
T  9330152 atgggagtttgacatgttggggatggtagtccaactatcgtccccacaac 9330201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 9395298 - 9395549
Alignment:
Q  33 ccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac---aata 129  Q
    ||||||||||||||  |||||||||||| |||| ||| |||||| ||||||  |||||||||||||||||||||||||||| ||||  |||||    ||     
T  9395298 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatc 9395397  T
Q  130 attttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggctcagcgatcaaatgagtggtc 229  Q
    ||||| |||| ||||||| |||||||||| ||| |||||| |||| |||||||||||| |||  || |||| ||| |||||||| || ||||||  | ||    
T  9395398 atttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaatttactttctccgccaatcacaggctcagctataaaatgatagctc 9395497  T
Q  230 aaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggcc 281  Q
    || || | | ||||||| ||||||||||||| ||||||||||| ||||||||    
T  9395498 aagtctgattcaatcataacagtccgaccagttttgtctaccatacaaggcc 9395549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 41980877 - 41980970
Alignment:
Q  17 aacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 110  Q
    |||||||||||||||||||||||||||||  |||| |||||| |||||| |||||||||  | |||||||||| | ||||||||||||||||||    
T  41980877 aacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 9756397 - 9756498
Alignment:
Q  11 gcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 110  Q
    |||||||| ||||| || | ||| || ||||||||| |||| || ||||||  || |||||||||||||||||||||||||||||||||| |||||||||    
T  9756397 gcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaa 9756496  T
Q  111 tc 112  Q
    ||    
T  9756497 tc 9756498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 41985644 - 41985744
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| |||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |||||||||    
T  41985644 agcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatca 41985743  T
Q  110 a 110  Q
    |    
T  41985744 a 41985744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 9494908 - 9494811
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacat 107  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||||| || |||  || ||||| ||  |||| |||||||||||||||| |||||    
T  9494908 agcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaagcctaagcacat 9494811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 9695715 - 9695615
Alignment:
Q  11 gcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 110  Q
    ||||||||||||||  | | |||||| ||||||||| |||| |||||||| |||| |||||||||| | ||||| |||||||||||||| || |||||||    
T  9695715 gcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T
Q  111 t 111  Q
    |    
T  9695615 t 9695615  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 9343861 - 9343961
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| ||||||||| |||||||||||||||||||  |||| |||||| | || | ||| |||||| | |||||  ||||||||||| |||||||||||    
T  9343861 agcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatca 9343960  T
Q  110 a 110  Q
    |    
T  9343961 a 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 9407382 - 9407482
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| || |||||||||||| | |||||||||||| |||| |||||| || ||| ||| ||||| ||||| |  ||||| ||||| ||||||||||||    
T  9407382 agcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatca 9407481  T
Q  110 a 110  Q
    |    
T  9407482 a 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 9448330 - 9448430
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| ||||||||  |||||||||||||||||||  |||| |||||| | || | ||| |||||  | ||||| ||||||| |||| |||||||||||    
T  9448330 agcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatca 9448429  T
Q  110 a 110  Q
    |    
T  9448430 a 9448430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 9486048 - 9485969
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 110  Q
    |||||| ||||||||| |||| || |||||  ||| ||  |||||| | ||||| |||||||||||||||||||||||||    
T  9486048 ccccaaaaacaaaaccatatcccccaaatttctcacctccacccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 13864241 - 13864320
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 110  Q
    |||||| ||||||||| |||| || |||||  ||| ||  |||||| |||||||  ||||||||||||||||||||||||    
T  13864241 ccccaaaaacaaaaccctatcccccaaatttctcacctccacccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 9617563 - 9617462
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 109  Q
    |||||| || |||||||||||| | | |||||||||| |||| ||||||||  ||| ||| |||||  | ||||||||||||| || ||| ||||| |||    
T  9617563 agcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttca 9617464  T
Q  110 at 111  Q
    ||    
T  9617463 at 9617462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 450186 - 450102
Alignment:
Q  35 aagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacag 119  Q
    ||||||||||   |||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 450102  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 7025793 - 7025880
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccataca 118  Q
    |||||||||||||||| ||||||||||| |||||| ||| |||||| | ||||| ||||||| |||| |||||| |||||||| ||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 7041514 - 7041621
Alignment:
Q  12 cagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaat 111  Q
    |||||||||||||| | |  ||||||||||||||| |||| |||||| | |||| ||| |||||| | ||||| ||||||| |||  |||||| ||||||    
T  7041514 cagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaat 7041613  T
Q  112 ccatacag 119  Q
    ||||||||    
T  7041614 ccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 7029850 - 7029937
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccataca 118  Q
    |||||||||||||||| |||| || ||| |||||| ||| |||||| | ||||| ||||||| |||| |||||| |||||||| ||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 7012857 - 7012947
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 121  Q
    |||||||||||||| | ||||||||||| | |||| ||| |||||| | ||||| ||||||| |||| |||||| |||||| | |||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacagga 7012947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 9170854 - 9170944
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 121  Q
    |||||||||||||||| |||| |||||| |||| |  || |||||| | ||||| ||||||| |||| |||||| |||||||| |||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacagga 9170944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 7046875 - 7046955
Alignment:
Q  30 tccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 110  Q
    |||||||||||||||| ||||| |||||| |||| | ||| |||||| | ||||| ||||||| |||| |||||| |||||    
T  7046875 tccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 9159574 - 9159484
Alignment:
Q  31 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 121  Q
    |||||||||||||||| |||| |||||| |||| |  || |||||| | ||||| ||||| | |||| |||||| |||||||| |||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacagga 9159484  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 4439876 - 4439920
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatctcc 54  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||    
T  4439876 agcagaaaacgaacatccattccccaaaaacaaaaccctatctcc 4439920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 18991220 - 18991256
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaacc 46  Q
    |||||| ||||||||||||||||||||||||||||||    
T  18991220 agcagaaaacgaacatccattccccaagaacaaaacc 18991256  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 20694401 - 20694360
Alignment:
Q  10 agcagagaacgaacatccattccccaagaacaaaaccttatc 51  Q
    |||||| |||||||||||||||||||| ||||||||| ||||    
T  20694401 agcagaaaacgaacatccattccccaaaaacaaaaccctatc 20694360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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