View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15929_high_8 (Length: 358)
Name: NF15929_high_8
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15929_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 357
Target Start/End: Complemental strand, 35293631 - 35293294
Alignment:
| Q |
22 |
catcatcagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaataataaaatggacaatcaataactattttgtaatttc |
121 |
Q |
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| T |
35293631 |
catcataagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaataataaaatgtacaattaataactattttataatttc |
35293532 |
T |
|
| Q |
122 |
gatacagtaagaggctattacggctatttgttaaacattcatggatgaaaatgactataacccctttgttttatttcaaagaaaaacatgtaacgtttgt |
221 |
Q |
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| T |
35293531 |
aatacagtaagaggctattacggctatctattaaacattcatggatgaaaattactataatccttttattttatttcaaagaaaaatatgtgacgtttgt |
35293432 |
T |
|
| Q |
222 |
ttaaaactattataaattatagtcatttatgtatggatgtact--ttttagtaattcaagtgcttcattgacatatgaacaacacattttgacaacatcc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293431 |
ttaaaactattataaattatagtcatttatgtatggatgtactttttttagtaattcaagtgcttcattgacatatgaacaacacattttgacaacatcc |
35293332 |
T |
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| Q |
320 |
ataatccatttgattttggccaagacaaagccaccatt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35293331 |
ataatccatttgattttggccaagacaaagccaccatt |
35293294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 28584946 - 28585008
Alignment:
| Q |
22 |
catcatcagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaat |
85 |
Q |
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| T |
28584946 |
catcataactaacttgtaacaaactaaatgtaatgtaaatgcaattg-aaatttacactcaaat |
28585008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 8407219 - 8407300
Alignment:
| Q |
98 |
aatcaataactattttgtaatttcgatacagtaagaggctattacggctatttgttaaacattcatggatgaaaatgactat |
179 |
Q |
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|||||||||||||||| ||||| |||||| | ||| ||| || || |||| |||| ||||| |||||||||||||||||| |
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| T |
8407219 |
aatcaataactattttaaaattttgatacattcagaaactaatatggttattcgttacacatttatggatgaaaatgactat |
8407300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 2519027 - 2519076
Alignment:
| Q |
22 |
catcatcagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaa |
71 |
Q |
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|||||| | |||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
2519027 |
catcataactaacttataactaactaaatgtaatctaaatgcaactgaaa |
2519076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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