View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15929_low_1 (Length: 391)

Name: NF15929_low_1
Description: NF15929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15929_low_1
NF15929_low_1
[»] chr1 (1 HSPs)
chr1 (12-391)||(18192159-18192533)
[»] chr7 (13 HSPs)
chr7 (198-327)||(21788258-21788387)
chr7 (218-317)||(21623242-21623341)
chr7 (212-391)||(21785449-21785628)
chr7 (213-300)||(21808182-21808269)
chr7 (199-328)||(21992203-21992341)
chr7 (205-317)||(21628161-21628273)
chr7 (212-317)||(21704686-21704791)
chr7 (210-391)||(21714224-21714405)
chr7 (210-313)||(21792052-21792155)
chr7 (212-317)||(21646786-21646891)
chr7 (212-317)||(21664141-21664246)
chr7 (210-263)||(21745573-21745626)
chr7 (217-313)||(21764110-21764206)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 18192533 - 18192159
Alignment:
Q  12 agagaaaaagtataaagtcatcacctcttgagtttgcaaggatccaccacaccacacccacgctttgtgcaaaaatgactgcgaataccacccttgaaca 111  Q
    ||||||||||||||||||||||||||| | |      ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192533 agagaaaaagtataaagtcatcacctcgtaat-----aaggatccatcacaccacacccacgctttgtgcaaaaatgactgcgaataccacccttgaaca 18192439  T
Q  112 aaggttcatcgacctacaaaatgcaaatctaacactccccaaatatttagcaatccccaaaatacagaaggttgcaagtgatcttcgaaatcgaaaagat 211  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192438 aaggttcatcgacctacaaaatgcaaatctaacactacccaaatatttagcaatccccaaaatacagaaggttgcaagtgatcttcgaaatcgaaaagat 18192339  T
Q  212 tttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  18192338 tttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtcgcccaaatttggagttatgagagaagtacaagctacagtgggcag 18192239  T
Q  312 caaaattcctcgaaaattttaggtgcaatccaaaggatctatgccaagatattgcagataacattaatgaactgaagggt 391  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18192238 caaaattcctcgaaaattttaggtgcaatccaaaggatctataccaagatattgcagataacattaatgaactgaagggt 18192159  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 21788258 - 21788387
Alignment:
Q  198 gaaatcgaaaagattttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaa 297  Q
    ||||| ||||| | ||||||||||||||||||||||| ||| | ||  | ||||||||||||||||  | | |||||||| |||||||||||||||||||    
T  21788258 gaaatagaaaaaactttgagaagcattactcgcccaagttgttgtcggtaggtcctatccatcatgacaacacaaatttgaagttaggagagaagtacaa 21788357  T
Q  298 gctacagtgggcagcaaaattcctcgaaaa 327  Q
    |||   |||||||||||||| | |||||||    
T  21788358 gcttatgtgggcagcaaaatacatcgaaaa 21788387  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 21623242 - 21623341
Alignment:
Q  218 aagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcagcaaaat 317  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |   ||||| || ||||||||||||||||||||||   ||||||||||||||    
T  21623242 aagcattactcacccaagttggtgtcaataggtcctatccatcatggcaatacaaatctgaagttaggagagaagtacaagcttatgtgggcagcaaaat 21623341  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 391
Target Start/End: Original strand, 21785449 - 21785628
Alignment:
Q  212 tttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcag 311  Q
    ||||||||||||||||| ||||| || || ||||| ||||||||||||||||  |  |||||| || ||  ||||||||||||||||||   |||||| |    
T  21785449 tttgagaagcattactcacccaagttagtgtcaataggtcctatccatcatgacaatccaaatctgaagacaggagagaagtacaagcttatgtgggccg 21785548  T
Q  312 caaaattcctcgaaaattttaggtgcaatccaaaggatctatgccaagatattgcagataacattaatgaactgaagggt 391  Q
    |||||| |||||| ||| |  |  ||||||||   ||||||  | || | ||||| ||||||||||||||||||||||||    
T  21785549 caaaatacctcgagaatataggccgcaatccacgcgatctacacaaaaagattgccgataacattaatgaactgaagggt 21785628  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 21808269 - 21808182
Alignment:
Q  213 ttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagct 300  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |    |||| || ||||||||||||||||||||||    
T  21808269 ttgagaagcattactcacccaagttggtatcaataggtcctatccatcatggaaatataaatctgaagttaggagagaagtacaagct 21808182  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 21992203 - 21992341
Alignment:
Q  199 aaatcgaaaagattttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggta------gcc---caaatttggagttaggagag 289  Q
    |||| ||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |      ||    ||||| || |||||||||||    
T  21992203 aaatagaaaagactttgagaagcactactcacccaaattggtgtcaataggtcctatccatcatggcaatacaagcaatgcaaatctgaagttaggagag 21992302  T
Q  290 aagtacaagctacagtgggcagcaaaattcctcgaaaat 328  Q
    |||||||||||   |||||||||||||| | ||||||||    
T  21992303 aagtacaagcttacgtgggcagcaaaatacatcgaaaat 21992341  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 21628161 - 21628273
Alignment:
Q  205 aaaagattttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacag 304  Q
    ||||||||||| |||| ||||||| ||||| || || ||||| ||||||||||||||||| ||  ||||| || |  |||||||||||||||||||   |    
T  21628161 aaaagattttgggaagtattactcacccaagtttgtgtcaataggtcctatccatcatggcagtacaaatctgaacataggagagaagtacaagcttgtg 21628260  T
Q  305 tgggcagcaaaat 317  Q
    |||||| ||||||    
T  21628261 tgggcatcaaaat 21628273  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 21704686 - 21704791
Alignment:
Q  212 tttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcag 311  Q
    |||||| |||||||||| ||||| || || || || ||||||||||||||||  |  |||| | || ||||||||||||||||||||||   ||||||||    
T  21704686 tttgagcagcattactcacccaagttagtgtcgataggtcctatccatcatgacaatccaactctgaagttaggagagaagtacaagcttatgtgggcag 21704785  T
Q  312 caaaat 317  Q
    ||||||    
T  21704786 caaaat 21704791  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 391
Target Start/End: Original strand, 21714224 - 21714405
Alignment:
Q  210 attttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggc 309  Q
    ||||||||||||||||||| ||||| || || ||| | ||||||||||||||||  |  |||||| || ||  ||||||||||||||| ||   ||||||    
T  21714224 attttgagaagcattactcacccaagtttgtgtcattaggtcctatccatcatgacaatccaaatctgaagaaaggagagaagtacaaacttatgtgggc 21714323  T
Q  310 agcaaaattcctcgaaaattttaggtgcaatccaaaggatctatgccaagatattgcagataacattaatgaactgaagggt 391  Q
    |||||||| | | |||||    ||   || |||| ||||||||  | || | ||||||||||||||| ||||||||||||||    
T  21714324 agcaaaatacatagaaaacaccagacacattccagaggatctacacaaaaagattgcagataacattgatgaactgaagggt 21714405  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 21792052 - 21792155
Alignment:
Q  210 attttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggc 309  Q
    |||||||||||||||||   || |  || |||||||| ||||| ||||||||||| ||  || || |||||||||||||||||||||||||   ||||||    
T  21792052 attttgagaagcattacatcccaaggtttgtatcaataggtcccatccatcatggcagtacagatctggagttaggagagaagtacaagcttatgtgggc 21792151  T
Q  310 agca 313  Q
    ||||    
T  21792152 agca 21792155  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 21646786 - 21646891
Alignment:
Q  212 tttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcag 311  Q
    |||||| |||||||| | ||||| ||||| ||||| ||||||||||||||||  |  |||||  || || |||||||||| ||||||||   ||||||||    
T  21646786 tttgaggagcattacacccccaagttggtgtcaataggtcctatccatcatgacaatccaaagctgaagataggagagaaatacaagcttatgtgggcag 21646885  T
Q  312 caaaat 317  Q
    ||||||    
T  21646886 caaaat 21646891  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 21664141 - 21664246
Alignment:
Q  212 tttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcag 311  Q
    ||||||||| ||||||| ||||| ||  | ||||| ||||||||||||||||| |   || || || ||||||||| ||||||||||||   ||||||||    
T  21664141 tttgagaagtattactcacccaagttcctgtcaataggtcctatccatcatggcaatacagatctgaagttaggagggaagtacaagcttatgtgggcag 21664240  T
Q  312 caaaat 317  Q
    ||||||    
T  21664241 caaaat 21664246  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 21745573 - 21745626
Alignment:
Q  210 attttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatg 263  Q
    ||||||||||||||||||| ||||| ||||| ||| | ||||||||||||||||    
T  21745573 attttgagaagcattactcacccaagttggtgtcattaggtcctatccatcatg 21745626  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 21764110 - 21764206
Alignment:
Q  217 gaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtagcccaaatttggagttaggagagaagtacaagctacagtgggcagca 313  Q
    |||||| ||| | ||||| ||| | ||||| ||||||||||||||||  ||  || || || ||||||||||||||||||||||  |||||||||||    
T  21764110 gaagcactacacacccaagttgttgtcaataggtcctatccatcatgacagatcagatctgaagttaggagagaagtacaagcttaagtgggcagca 21764206  T

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