View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1592_high_1 (Length: 604)
Name: NF1592_high_1
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 32742017 - 32741428
Alignment:
| Q |
1 |
cccctaagctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatctacttccttttccggacaaaacatagactcaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32742017 |
cccctaagctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatctacttctttttccggacaaaacatagactcaatcaa |
32741918 |
T |
|
| Q |
101 |
agaagagcaaagtagtaaactttgtcctttgattttaatcaatatttatttataactataattgatctatatccttttcaaaagttatattcaattaggc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741917 |
agaagagcaaagtagtaaactttatcctttgattttaatcaatatttatttataactataattgatctatatccttttcaaaagttatattcaattaggc |
32741818 |
T |
|
| Q |
201 |
tacgtggttagaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaaaactttccatagcaggaatcatatatcatgtgaccaattcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32741817 |
tacgtggttagaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaagactctccatagcaggaatcatatatcatgtaaccaattcaa |
32741718 |
T |
|
| Q |
301 |
aacaaatttgatgtttttgtttttcttctttcacatgtagtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgttaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741717 |
aacaaatttgatgtttttgtttttcttctttcacatgtagtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgttaa |
32741618 |
T |
|
| Q |
401 |
ataaaataacccatgagtcacacaatttannnnnnnactcaagaatattaggcaaaccaattaatataaatagcacgatccccccatgagatgcttaaat |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32741617 |
ataaaataacacatgagtcacacaatttattcttttactcaagaatgttaggcaaaccaattaatataaatagcacgacccccccatgagatgcttaaat |
32741518 |
T |
|
| Q |
501 |
attatagtagtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttatttt |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741517 |
attatagtagtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttatttt |
32741428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 32738916 - 32738364
Alignment:
| Q |
8 |
gctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatctacttccttttccggacaaaacatagactcaatcaaagaagag |
107 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
32738916 |
gctaaataattatacacactaaaggcagtaccaagaaatttagcaaattcgaccatctgcttc-ttttccagtcaaaacatagactcaatcaaagaagag |
32738818 |
T |
|
| Q |
108 |
caaagtagtaaactttgtcc-tttgattttaatcaat-atttatttataactataattgatctatatccttttcaaaagttatattcaattaggctacgt |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
32738817 |
caaagtagtaaactttgtccttttgattttaattaataatttattta----tataattgatctatatccttttcaaaagatctattcaattaggctacgt |
32738722 |
T |
|
| Q |
206 |
ggttagaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaaaactttccatagcaggaatca-----tatatcatgtgaccaattcaa |
300 |
Q |
| |
|
| |||||||||| || || ||||| | |||||||||||||||||||| ||||||||| | || ||||||||||||||||||||| |
|
|
| T |
32738721 |
gattagaaggaaatgagaaaaagaga-----------atgcattcaagtcaaaaactctccatagcaaatagcatgaattatatcatgtgaccaattcaa |
32738633 |
T |
|
| Q |
301 |
aacaaatttgatgtttttgtttttcttctttcacatg---tagtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgt |
397 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||| ||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32738632 |
aacaaatttgatctttttgttttgcttctttcaaatgtaatagtaatataagataaccgttagttaattaataaatgatcactagtcaacattaaatcgt |
32738533 |
T |
|
| Q |
398 |
taaat-aaaataacccatgagtcacacaatttannnnnnnactcaagaatattaggcaaaccaattaatataaatagcacgatccccccatgagatgctt |
496 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32738532 |
taaataaaaataactcatgagt----taattt-----tttactcaagaatgttaggtacaccaattaatataaatagcacgatccccccatgagatgctc |
32738442 |
T |
|
| Q |
497 |
aaatattatagtagtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttatttt |
590 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32738441 |
aaatatt-------tg---------tcttgcttattaaatctccaattctttttcaaagacacacaacaccatgaaggttctcaaagttatttt |
32738364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University