View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592_high_10 (Length: 244)
Name: NF1592_high_10
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26262726 - 26262957
Alignment:
| Q |
1 |
tccagaatgtggatatgaggaattcagaacaagttctgtgataaggcgtgagcttgacaagttaggtatatcttatcaatggcctgttgctaaaactgga |
100 |
Q |
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| T |
26262726 |
tccagaacttggatatgaggaattcagaacaagttctgtgataaggcgtgagcttgacaagttaggtatatcttatcaatggcctgttgctaaaactgga |
26262825 |
T |
|
| Q |
101 |
gttgttgctaaaattggttctggatttcctccatttgttgctcttagagctgacatggatgctttgccaattcaggtaacaaaaataaaacatgttgcca |
200 |
Q |
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| T |
26262826 |
gttgttgctaaaattggttctggatttcctccatttgttgctcttagagctgacatggatgctttgccaattcaggtaacaaaaataaaacatgttgcca |
26262925 |
T |
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| Q |
201 |
aaacttcactttcttgtgttttttattaagat |
232 |
Q |
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| T |
26262926 |
aaacttcactttcttgtgtttttaattaagat |
26262957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 31839608 - 31839411
Alignment:
| Q |
13 |
atatgaggaattcagaacaagttctgtgataaggcgtgagcttgacaagttaggtatatcttatcaatggcctgttgctaaaactggagttgttgctaaa |
112 |
Q |
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| T |
31839608 |
atatgaagaattcaagacaagttctgttataaggcgtgagcttgacaagttaggtgttgtttatcaatggcctgtggctaaaactggtgttgttgctaaa |
31839509 |
T |
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| Q |
113 |
attggttctggatttcctccatttgttgctcttagagctgacatggatgctttgccaattcaggtaacaaaaataaaacatgttgccaaaacttcact |
210 |
Q |
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| T |
31839508 |
gttggttctggatttgctccttttgttgctcttagagctgacatggatgctttgccaattcaggtaaaacaaataacacatgttgcaaaaacttcact |
31839411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 43227935 - 43227898
Alignment:
| Q |
126 |
ttcctccatttgttgctcttagagctgacatggatgct |
163 |
Q |
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| T |
43227935 |
ttcctccttttgttgctcttagagctgacatggatgct |
43227898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 43206425 - 43206388
Alignment:
| Q |
126 |
ttcctccatttgttgctcttagagctgacatggatgct |
163 |
Q |
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| T |
43206425 |
ttcctccttttgttgctcttagagctgatatggatgct |
43206388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 43224134 - 43224097
Alignment:
| Q |
126 |
ttcctccatttgttgctcttagagctgacatggatgct |
163 |
Q |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
43224134 |
ttcctccttttgtcgctcttagagctgacatggatgct |
43224097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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