View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1592_high_14 (Length: 222)

Name: NF1592_high_14
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1592_high_14
NF1592_high_14
[»] chr3 (16 HSPs)
chr3 (19-219)||(772156-772356)
chr3 (19-219)||(2455067-2455267)
chr3 (67-142)||(12217290-12217365)
chr3 (21-168)||(37758423-37758570)
chr3 (67-142)||(7428315-7428390)
chr3 (24-189)||(7443655-7443820)
chr3 (51-195)||(7334926-7335070)
chr3 (27-169)||(2501395-2501537)
chr3 (51-135)||(7325112-7325196)
chr3 (51-166)||(2491347-2491462)
chr3 (24-209)||(2474350-2474535)
chr3 (78-166)||(9566506-9566594)
chr3 (64-168)||(13497460-13497564)
chr3 (27-166)||(9562647-9562786)
chr3 (114-155)||(988700-988741)
chr3 (27-156)||(9609055-9609184)
[»] chr6 (1 HSPs)
chr6 (27-209)||(24418111-24418293)
[»] chr7 (1 HSPs)
chr7 (19-156)||(27754857-27754994)
[»] scaffold0760 (1 HSPs)
scaffold0760 (19-208)||(3859-4048)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 772356 - 772156
Alignment:
Q  19 cactgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  772356 cactgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaatac 772257  T
Q  119 tttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggtaagttattt 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  772256 tctaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatgttaagatctaccaacaacttaggtaagttattt 772157  T
Q  219 c 219  Q
    |    
T  772156 c 772156  T

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Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 2455067 - 2455267
Alignment:
Q  19 cactgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattc 118  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2455067 cactgcccactcttccattcgatctcgtggcggaaattctgtgccggcttcctgtgaagttactcgtgcagcttcgctgcctctgcaagtcctttaattc 2455166  T
Q  119 tttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggtaagttattt 218  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||  |||  ||| ||||||| ||||||||||||||||||||||||||||||||    
T  2455167 tcttatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccgcacgccaccacctaatgttaagatctaccaacaacttaggtaagttattt 2455266  T
Q  219 c 219  Q
    |    
T  2455267 c 2455267  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 12217290 - 12217365
Alignment:
Q  67 ttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgc 142  Q
    |||| |||||||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  12217290 ttccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctgatcccaaatttgc 12217365  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 37758570 - 37758423
Alignment:
Q  21 ctgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctt 120  Q
    ||||| |||||||| |||||| | ||||| || ||||| ||  |||||||||| ||||||||| | || || || ||||||||||||||||| |||||||    
T  37758570 ctgccgactcttcctttcgatttggtggcagaaattctatgtaggcttcctgtcaagttactcttacaactccgatgcctctgcaagtccttgaattctt 37758471  T
Q  121 taatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaacca 168  Q
    |||| |  ||||||||||| ||||| ||||| ||||  ||||||||||    
T  37758470 taatcttggatcccaaattcgctaagaagcatcttcgtatgtcaacca 37758423  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 7428390 - 7428315
Alignment:
Q  67 ttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgc 142  Q
    |||| |||||||||||| | ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  7428390 ttccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctgatcccaaatttgc 7428315  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 7443820 - 7443655
Alignment:
Q  24 cccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaa 123  Q
    ||||||||||| ||||||||  |  | |||||||| ||| |||||||||| || |||||| | || ||||| |||||||| |||| ||| ||||||||||    
T  7443820 cccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctttaa 7443721  T
Q  124 tatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaa 189  Q
    | ||||||||||| || || || |||||| ||||| | ||| |||| | | ||||||| |||||||    
T  7443720 tttctgatcccaatttcgccaagaagcactttcaattttcagccaagcatcaccgcctcatggtaa 7443655  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 7335070 - 7334926
Alignment:
Q  51 gagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagc 150  Q
    |||||||||||  ||||||| || || |||||||| |||||||| || ||||| |||| |||||||||| | || |||||||| ||||| || || ||||    
T  7335070 gagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctgttatctctgatccaaaattcgcaaagaagc 7334971  T
Q  151 accttcaaatgtcaaccaaacgtaaccgcctaatggtaagatcta 195  Q
    |||||||| ||||||| || ||  ||| ||| ||||||| |||||    
T  7334970 accttcaattgtcaacaaagcgccaccacctcatggtaacatcta 7334926  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 2501395 - 2501537
Alignment:
Q  27 actcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatat 126  Q
    |||||||  ||||||||| || | |||||||||||| ||||||| || || ||||| || |||||||| ||||| || |||| ||| ||||||||||| |    
T  2501395 actcttcttttcgatcttttgcctgagattctgtgcaggcttccggtgaaattactagtacagcttcgatgcctttgtaagttcttcaattctttaattt 2501494  T
Q  127 ctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaa 169  Q
    ||||||| ||||| || || || || ||||  |||||||||||    
T  2501495 ctgatcctaaattcgcaaagaaacatcttcgtatgtcaaccaa 2501537  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 7325196 - 7325112
Alignment:
Q  51 gagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatccca 135  Q
    |||||||| ||| |||||||||| || |||||| | |||||||| |||||||| |||| ||| ||||||||||| ||||||||||    
T  7325196 gagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctttaatttctgatccca 7325112  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 2491347 - 2491462
Alignment:
Q  51 gagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagc 150  Q
    |||||||||||  ||||||| || || ||||| || |||||||| ||||| || ||||  || ||||||||||| |||||||| ||||| || |||||||    
T  2491347 gagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctttaatttctgatcctaaattcgcaaaaaagc 2491446  T
Q  151 accttcaaatgtcaac 166  Q
    | |||||| |||||||    
T  2491447 atcttcaattgtcaac 2491462  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 2474350 - 2474535
Alignment:
Q  24 cccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaa 123  Q
    ||||||||||| || |||||  || | |||||||| ||  ||||||| || || ||||  || |||||||| |||||||| |||| ||||||||||||||    
T  2474350 cccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattctttaa 2474449  T
Q  124 tatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggt 209  Q
    | ||  |||||| ||| || || || ||||||||| | |||| ||| ||  ||| ||| ||||||| ||||| |||| ||||||||    
T  2474450 tttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaacatctagcaactacttaggt 2474535  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 9566594 - 9566506
Alignment:
Q  78 ttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaac 166  Q
    |||||||  |||||||| ||||||||||||||||| |||||| | || |||||||| ||||| || ||||| || |||||| |||||||    
T  9566594 ttactcggacagcttcggtgcctctgcaagtccttcaattctcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaac 9566506  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 13497460 - 13497564
Alignment:
Q  64 ggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtc 163  Q
    ||||||| || |||||||| || || ||||| |||||||||||||  ||||||||||| || ||||||||  |||| || || |||||||||||  ||||    
T  13497460 ggcttccggtgaagttacttgtacaacttcgatgcctctgcaagttttttaattctttgatctctgatcctgaattcgcaaagaagcaccttcatttgtc 13497559  T
Q  164 aacca 168  Q
    |||||    
T  13497560 aacca 13497564  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 9562786 - 9562647
Alignment:
Q  27 actcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatat 126  Q
    |||||||| || |||||| || | || ||||| ||  ||||||| || || ||||| || |||||||| || || ||  ||| ||| ||||||||||| |    
T  9562786 actcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtgagttcttcaattctttaattt 9562687  T
Q  127 ctgatcccaaatttgctaaaaagcaccttcaaatgtcaac 166  Q
    |  ||||||||||||| || |||||||||||| |||||||    
T  9562686 ccaatcccaaatttgcaaagaagcaccttcaattgtcaac 9562647  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 988700 - 988741
Alignment:
Q  114 aattctttaatatctgatcccaaatttgctaaaaagcacctt 155  Q
    ||||||||||| |||||||||||||| || ||||||||||||    
T  988700 aattctttaatctctgatcccaaattcgcaaaaaagcacctt 988741  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 9609184 - 9609055
Alignment:
Q  27 actcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatat 126  Q
    |||||||||||||||||  | | ||| ||| ||||| | ||||| |||||| |||| ||||||||||| |||||  |||| ||||| ||||   |||| |    
T  9609184 actcttccattcgatctgattgtggaaattatgtgcagacttccggtaaagctactagtgcagcttcggtgccttggcaaatccttcaattacctaattt 9609085  T
Q  127 ctgatcccaaatttgctaaaaagcaccttc 156  Q
    | ||||| ||||| || || ||||||||||    
T  9609084 cagatccgaaattcgccaagaagcaccttc 9609055  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 24418293 - 24418111
Alignment:
Q  27 actcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatat 126  Q
    |||||||| ||||||||||| || |||||||||||  ||||||| || ||||||||| | || |||||||| |||||||||||||| ||||| ||||| |    
T  24418293 actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaatct 24418194  T
Q  127 ctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggt 209  Q
    ||||||||||||| || || ||||||||||   |||||||||  ||  | ||||| ||| |||  ||||||||| ||||||||    
T  24418193 ctgatcccaaattcgcaaacaagcaccttcgcttgtcaaccaggcgccatcgcctcatgttaatgtctaccaacgacttaggt 24418111  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 27754857 - 27754994
Alignment:
Q  19 cactgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattc 118  Q
    |||| ||||||||| ||||||||||  | |  ||||||||||||  |||||| || ||||||||  | || ||| | |||||||| ||||||||||||||    
T  27754857 cacttcccactcttacattcgatctcatcgaagagattctgtgcatgcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaattc 27754956  T
Q  119 tttaatatctgatcccaaatttgctaaaaagcaccttc 156  Q
    |||||| || ||||| |||||||| || || |||||||    
T  27754957 tttaatctccgatccaaaatttgccaagaaacaccttc 27754994  T

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Target: scaffold0760 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 3859 - 4048
Alignment:
Q  19 cactgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattc 118  Q
    |||| |||| |||||| || |||||||| || || || |||||  ||||||| || || |||||| | ||  |||||||| |||||||||| || || ||    
T  3859 cactacccagtcttccgttagatcttgttgccgaaatcctgtgtaggcttcccgtgaaattactccttcaatttcgctgcgtctgcaagtctttcaaatc 3958  T
Q  119 tttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttagg 208  Q
     ||||| |||||||  ||||| | ||| |||||||||||  ||||||| || ||  ||| |||  |||||||  ||||||||||||||||    
T  3959 cttaatttctgatcataaattcggtaagaagcaccttcagttgtcaacaaagcgccaccacctcttggtaagcactaccaacaacttagg 4048  T

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