View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592_high_15 (Length: 220)
Name: NF1592_high_15
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 34873419 - 34873235
Alignment:
| Q |
19 |
aaaagaactcgtgatgcatatgtagacaccctcct---taacatacatatcttcaagatttacagtaagaatatgttctgtgtcgataatacttggtatt |
115 |
Q |
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| T |
34873419 |
aaaagaactcgtgatgcatatgtagacaccctcctaattaacatacatagcttcaagatttacaataagaatatgttctgtgtcgataatacttggtatt |
34873320 |
T |
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| Q |
116 |
tagaaaatcctaattttatttttcaatgttaaatggccttatcgagttaaaatatgaaatagatacatgacttacatgtttactc |
200 |
Q |
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| T |
34873319 |
tagaaaatcctaattttatttttcaatgttaaatggccttatcgagttaaaatatgaaatagatacatgacttacatgtttactc |
34873235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 9919035 - 9919111
Alignment:
| Q |
121 |
aatcctaattttatttttcaatgttaaatggccttatcgagtt-aaaatatgaaatagatacatgacttacatgttt |
196 |
Q |
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| T |
9919035 |
aatcctaattttatttttcaatgttaaatggccatgtcgagttaaaaatatgaaacagatgcaagattaacatgttt |
9919111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 34874950 - 34874885
Alignment:
| Q |
126 |
taattttatttttcaatgttaaatggccttatcgagttaaaatatgaaatagatacatgacttacatgttt |
196 |
Q |
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| T |
34874950 |
taattttatttttcaatgttaaatgacc-----gagttaaaatatgaaacagatacatgactaacatgttt |
34874885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 9918931 - 9919019
Alignment:
| Q |
36 |
atatgtagacaccctccttaacat--acatatcttcaagatttacagtaaga-atatgttctgtgtcgataatacttggtatttagaaa |
121 |
Q |
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| T |
9918931 |
atatgaagacaccctccttaacactcacatagcttcaagatttacaatatgatacatgttctgtgtcaataatactcggtattcagaaa |
9919019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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