View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1592_high_5 (Length: 317)

Name: NF1592_high_5
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1592_high_5
NF1592_high_5
[»] chr1 (1 HSPs)
chr1 (11-301)||(42125582-42125875)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 42125875 - 42125582
Alignment:
Q  11 cacagatatcataaggtgttaacacctttcatactcataatcgtctctcgaactaaaaaa-catagtaatttctggaattatcccaaattcaggttcttg 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  42125875 cacagatattataaggtgttaacacctttcatactcataatcgtctctcgacctaaaaaaacatagtaatttctggaattatcccaaattcaggttcttg 42125776  T
Q  110 aaatattttaatttgatttcaaattaatttttatcatcgttnnnnnnnn--tcacctttgaatattttcttggatagaaactggattggatatttattac 207  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125775 aaatattttaatttgatttcaaattaatttttatcatcgttaaaaaaaaaatcacctttgaatattttcttggatagaaactggattggatatttattac 42125676  T
Q  208 tcgtttattattatcatcaattatttcgttgaaatcatgtatattgatagatcaacaaatcgattaattggtaacaactttatgaagtataatc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125675 tcgtttattattatcatcaattatttcgttgaaatcatgtatattgatagatcaacaaatcgattaattggtaacaactttatgaagtataatc 42125582  T

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