View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592_high_8 (Length: 251)
Name: NF1592_high_8
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 21868292 - 21868060
Alignment:
| Q |
15 |
aaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttgaagctcgtacgttttaag |
114 |
Q |
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| T |
21868292 |
aaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttgaagctcgtacgttttaag |
21868193 |
T |
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| Q |
115 |
aatggattgtacatcgatggagttttgcggccaagtcaatagtctaccatcaccatcatacacaattaagcaagcttcaactccaaatttgctagaaaat |
214 |
Q |
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| T |
21868192 |
aatggattgtacaacgatggagttttgcggccaagtcaatagtctaccatcaccatcatacacaattaagcaagcttcaactccaaatttgctagaaaat |
21868093 |
T |
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| Q |
215 |
tcagaaacttttttcaccaatcctatgcttctc |
247 |
Q |
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| T |
21868092 |
tcagaaacttttttcgccaatccattgcttctc |
21868060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 21819143 - 21819203
Alignment:
| Q |
15 |
aaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatctt |
75 |
Q |
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| T |
21819143 |
aaatctcaccttcaatcttattcttcttatttgcaaaatagtccttcacatcaaagatctt |
21819203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 21876165 - 21876106
Alignment:
| Q |
15 |
aaatctcaccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatct |
74 |
Q |
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| T |
21876165 |
aaatctcactttcaatcttattcttcttattttcaaaatagtctttcacatcaaagatct |
21876106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 21819303 - 21819365
Alignment:
| Q |
166 |
accatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaactttttt |
228 |
Q |
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| T |
21819303 |
accatcatatacaatcaagcaagcttcaactccaaacttgttagaaaatttagaaactttttt |
21819365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 21876005 - 21875943
Alignment:
| Q |
166 |
accatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaactttttt |
228 |
Q |
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| T |
21876005 |
accatcatatacaatcaagcaagcttcaactccaaactttctagacaaatcagaaactttttt |
21875943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 44260282 - 44260210
Alignment:
| Q |
25 |
ttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttga |
97 |
Q |
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||||||||| | ||||||||| |||| |||||||| |||||||| ||||| |||||| |||||||||||||| |
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| T |
44260282 |
ttcaaccttttctttcttattttcaaagtagtccttgacatcaaatatcttaggagttttctcaatcttttga |
44260210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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