View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1592_low_14 (Length: 235)

Name: NF1592_low_14
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1592_low_14
NF1592_low_14
[»] chr7 (5 HSPs)
chr7 (1-221)||(43071049-43071270)
chr7 (1-221)||(1262321-1262543)
chr7 (1-117)||(48849449-48849565)
chr7 (129-221)||(48849601-48849695)
chr7 (156-221)||(26909806-26909873)
[»] chr3 (4 HSPs)
chr3 (1-221)||(37982585-37982806)
chr3 (1-221)||(19881778-19881999)
chr3 (1-221)||(53972953-53973174)
chr3 (59-221)||(31685310-31685474)
[»] chr2 (4 HSPs)
chr2 (1-221)||(23348647-23348868)
chr2 (1-221)||(12741921-12742142)
chr2 (1-221)||(18354980-18355201)
chr2 (63-221)||(10328626-10328785)
[»] chr5 (4 HSPs)
chr5 (1-221)||(9044035-9044256)
chr5 (1-221)||(7473156-7473377)
chr5 (1-221)||(30442213-30442435)
chr5 (153-186)||(22009359-22009392)
[»] scaffold0596 (1 HSPs)
scaffold0596 (1-221)||(887-1108)
[»] chr8 (5 HSPs)
chr8 (1-215)||(14677689-14677904)
chr8 (1-221)||(31100539-31100760)
chr8 (58-221)||(5658004-5658168)
chr8 (20-211)||(33688984-33689177)
chr8 (1-38)||(5658173-5658210)
[»] chr4 (1 HSPs)
chr4 (2-221)||(29863029-29863249)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-211)||(11301-11512)
[»] scaffold0035 (1 HSPs)
scaffold0035 (9-221)||(35296-35507)
[»] chr6 (3 HSPs)
chr6 (44-221)||(33045141-33045319)
chr6 (29-221)||(10092731-10092917)
chr6 (9-117)||(22000988-22001096)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43071049 - 43071270
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  43071049 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 43071148  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43071149 ctcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 43071248  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  43071249 agaaagaggtggacatcgataa 43071270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1262543 - 1262321
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  1262543 tggtgaagggcgacgacaggagagagctgcggcgacggagaaagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 1262444  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt--aaaatgaag 198  Q
    |||||||||||||||||       ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1262443 ctcaaagggcgaagagattttttcgagtaaaagcaatatgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaaatgaag 1262344  T
Q  199 gagaaagaggtggacatagataa 221  Q
    |||||||||||| |||| |||||    
T  1262343 gagaaagaggtgaacatcgataa 1262321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 48849449 - 48849565
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  48849449 tggtgaagggcgacgaaaggagagagctgcggcgacggagaaagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 48849548  T
Q  101 ctcaaagggcgaagaga 117  Q
    |||||||||||||||||    
T  48849549 ctcaaagggcgaagaga 48849565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 48849601 - 48849695
Alignment:
Q  129 aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||| |||||    
T  48849601 aaaagcaatctgaattccaacacataaagaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataa 48849695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 26909806 - 26909873
Alignment:
Q  156 agaaggaataatgggagaggagagaagagaac--ttaaaatgaaggagaaagaggtggacatagataa 221  Q
    ||||||||||||||||||||||| ||||||||  | ||||||||||||||| |||||| ||| |||||    
T  26909806 agaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataa 26909873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37982806 - 37982585
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  37982806 tggtgaagggcgacgataggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 37982707  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||| ||||||||||||       ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37982706 ctcagagggcgaagagatttttttgagtaaaagcaatctgaattccaaaacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 37982607  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  37982606 agaaagaggtggacatcgataa 37982585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19881778 - 19881999
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||| || || ||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  19881778 tggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 19881877  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19881878 ctcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagataacttaaaaatgaagg 19881977  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  19881978 agaaagaggtggacatcgataa 19881999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53972953 - 53973174
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||    
T  53972953 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaa 53973052  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    ||||||||| |||||||       ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  53973053 ctcaaagggagaagagatttttttgagtaaaagcaatctgaattccaacacataaagaatgaataatgggagaggagagaagaaaacttaaaaatgaagg 53973152  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  53973153 agaaagaggtggacatcgataa 53973174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 31685474 - 31685310
Alignment:
Q  59 aattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaagcaatctgaattccaacacataaag 157  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||        ||| ||||||||| |||||||||||||||||||    
T  31685474 aattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatttgaattccaacacataaag 31685375  T
Q  158 aaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa 221  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  31685374 aaggaataatggaagaggagagaaaagaacttaaaaatgaaggagaaagaggtggacatcgataa 31685310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23348647 - 23348868
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  23348647 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 23348746  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23348747 ctcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 23348846  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  23348847 agaaagaggtggacatcgataa 23348868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12742142 - 12741921
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  12742142 tggtgaagggcgacgacaggagagagctgcggcggcggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 12742043  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12742042 ctcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 12741943  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  12741942 agaaagaggtggacatcgataa 12741921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18354980 - 18355201
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| |||||    
T  18354980 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgagatggaagatgaacaa 18355079  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18355080 ctcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 18355179  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  18355180 agaaagaggtggacatcgataa 18355201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 10328626 - 10328785
Alignment:
Q  63 ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga 162  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||       ||| ||||||||||| ||||||||||||||||||||||    
T  10328626 ttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaagga 10328725  T
Q  163 ataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa 221  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  10328726 ataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataa 10328785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9044256 - 9044035
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  9044256 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 9044157  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    ||||||||||||||| |       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9044156 ctcaaagggcgaagaaatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 9044057  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  9044056 agaaagaggtggacatcgataa 9044035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7473156 - 7473377
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  7473156 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcgacaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 7473255  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||||||||||       ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7473256 ctcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 7473355  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  7473356 agaaagaggtggacatcgataa 7473377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30442213 - 30442435
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  30442213 tggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 30442312  T
Q  101 ctcaaagggcgaagaga-nnnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaac-ttaaaatgaag 198  Q
    |||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  30442313 ctcaaagggcgaagagattttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgagagtggagagaagagaactttaaaatgaag 30442412  T
Q  199 gagaaagaggtggacatagataa 221  Q
    ||||||||||||||||| |||||    
T  30442413 gagaaagaggtggacatcgataa 30442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 22009359 - 22009392
Alignment:
Q  153 taaagaaggaataatgggagaggagagaagagaa 186  Q
    ||||||||||||||||||||||||||||| ||||    
T  22009359 taaagaaggaataatgggagaggagagaacagaa 22009392  T

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Target: scaffold0596 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1108 - 887
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||| |||||    
T  1108 tggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaa 1009  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    ||||||||| |||||||       ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1008 ctcaaagggagaagagatttttttgagtaaaagcaatttgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 909  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||||||| |||||    
T  908 agaaagaggtggacatcgataa 887  T

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Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14677689 - 14677904
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| |||||    
T  14677689 tggtgaagggtgacgataggagagagctgcggcgacggagagagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatgaacaa 14677788  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    |||||||||  ||||||       ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14677789 ctcaaaggggaaagagatttttttgagtaaaagcaatctgaatttcaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 14677888  T
Q  200 agaaagaggtggacat 215  Q
    ||||||||||||||||    
T  14677889 agaaagaggtggacat 14677904  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31100539 - 31100760
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| ||||||||| |||| |||||||||||| ||| ||| ||  ||||||||| ||||||||||||||||||||||||||| |||||    
T  31100539 tggtgaagggcgacgacaggagagagttgcggcgacggagagagtggcgacggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaa 31100638  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    ||||||||| |||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31100639 ctcaaagggggaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 31100738  T
Q  200 agaaagaggtggacatagataa 221  Q
    |||||||||||| ||| |||||    
T  31100739 agaaagaggtgggcatcgataa 31100760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 5658168 - 5658004
Alignment:
Q  58 gaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaag 157  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||       ||| |||||||||||||||||||||||||||||    
T  5658168 gaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaattccaacacataaag 5658069  T
Q  158 aaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||    
T  5658068 aaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataa 5658004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 33688984 - 33689177
Alignment:
Q  20 gagagagctgcgacgacggagagagcggcaacgacagcgaatt-ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagan 118  Q
    |||||||||||| |||||||||||||||| | |  || ||| | |||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||     
T  33688984 gagagagctgcggcgacggagagagcggcgatgggagagaagtcttgtttgaatgtctaagagtgaggtggaagatgaacaactcaaaggg-gaagagat 33689082  T
Q  119 nnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaac-ttaa-aatgaaggagaaagaggtgg 211  Q
          ||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  33689083 ttttttgagtaaaagcaatctgaattccaaaaagtaaagaaggaataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgg 33689177  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5658210 - 5658173
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacgg 38  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  5658210 tggtgaagggcgacgacaggagagagctgcggcgacgg 5658173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 29863029 - 29863249
Alignment:
Q  2 ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac 101  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||    
T  29863029 ggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaac 29863128  T
Q  102 tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaact-taaaatgaagga 200  Q
    ||||||||  ||||||       ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  29863129 tcaaaggggaaagagatttttttgagtaaaagcaatctgaattctaacacataaagaaggaataatgggagaggagataagagaactaaaaaatgaagga 29863228  T
Q  201 gaaagaggtggacatagataa 221  Q
    ||||||||||||||| |||||    
T  29863229 gaaagaggtggacatcgataa 29863249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11301 - 11512
Alignment:
Q  1 tggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaa 100  Q
    |||||||||||||||| | |||||||||||| |||||||||||||||  || |||  ||||||||| |||||||||| |||||||||||||||| |||||    
T  11301 tggtgaagggcgacgacaagagagagctgcggcgacggagagagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatgaacaa 11400  T
Q  101 ctcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagg 199  Q
    ||||||||| |||| ||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11401 ctcaaagggggaagggatttgtttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagg 11500  T
Q  200 agaaagaggtgg 211  Q
    ||||||||||||    
T  11501 agaaagaggtgg 11512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 35507 - 35296
Alignment:
Q  9 ggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagg 108  Q
    |||||||| |||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  35507 ggcgacgacaggagagagctgcggcgacggagagagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagg 35408  T
Q  109 gcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagag 207  Q
    |  ||  ||       ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||| ||||||||||||||| ||    
T  35407 ggaaaacgatttttttgagtaaaagcaatctgaattccaactcataaagaaggaataatgggagaggagag--gagaacttaaaaatgaaggagaaaaag 35310  T
Q  208 gtggacatagataa 221  Q
    |||||||| |||||    
T  35309 gtggacatcgataa 35296  T

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Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 33045141 - 33045319
Alignment:
Q  44 gcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaat 143  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||||       ||| |||||||||||||||    
T  33045141 gcggcgacgacaaagaattttgtttgaatgtctgagagtgaggttgaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaat 33045240  T
Q  144 tccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa 221  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  33045241 tccaacacataaagaaggaataatgggagaggagacaagagaacttaaaaatgaaggagaaagaggtggacatcgataa 33045319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 10092917 - 10092731
Alignment:
Q  29 gcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngaga 128  Q
    |||||||| ||||||||||| |||  || ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||  ||||||       |||     
T  10092917 gcgacgacagagagagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaacttaaaggg--aagagatttttttgagt 10092820  T
Q  129 aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataa 221  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||     ||||||| |||||||||||||||||||||||||| |||||    
T  10092819 aaaagcaatttgaattccaacacataaagaaggaataatgggagaggag-----agaacttaaaaatgaaggagaaagaggtggacatcgataa 10092731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 22000988 - 22001096
Alignment:
Q  9 ggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagg 108  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  22000988 ggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatgaacaactcaaagg 22001087  T
Q  109 gcgaagaga 117  Q
    | |||||||    
T  22001088 gggaagaga 22001096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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