View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1592_low_2 (Length: 506)
Name: NF1592_low_2
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Complemental strand, 34549838 - 34549383
Alignment:
| Q |
14 |
gagatgaagaccttttgttacgaaggaatcttgtacactccaggtatttataga-atttatttagaaaataccaaatttgacaaagatgaagatgttaat |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||| || | ||| |||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34549838 |
gagatgaagaccttttggtacgaaggaatcttatacactccaggtcttga-agagatttatgtagaaaatactaaatttgacaaagatgaagatgttaat |
34549740 |
T |
|
| Q |
113 |
gaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactatctccttttgtccctcctaactatgtctctttcctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34549739 |
gaagtgatacaacgacagaataaatgattgagtgtttggtgtgaggtatgaattattacaactatctccttttgtccctcctacctatgtctctttcctc |
34549640 |
T |
|
| Q |
213 |
actcgtttataatctctggtttagagaagaatccatcttctttaatgcatgaatttctcaaagtttctttttccctattcttgaagtttcgaaaataatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34549639 |
actcgtttataatctctggtttagagaagaacccatcttctttaatgcatgaatttctca--------------------ttgaagtttcgaaaataatt |
34549560 |
T |
|
| Q |
313 |
tcacataaaggaactaagattttgtgtacaactttatcaattaggagggatacaaaatgtccaacattccatttggactaattcattcatgctgatcttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34549559 |
tcacataaaggaactaagattttgtgtacaactttatcaattaggagggatacaaaatgtccaacattccatttggactaattcattcatgctgatcttt |
34549460 |
T |
|
| Q |
413 |
tactcttgccatctttgctagaaacttgtaagaagtgtgatttgcgtcacttattatatttctaagaaattggaatt |
489 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34549459 |
tactcttgccgtctttgcaagaaacttgtaagaagtgtgatttgcgtcacttattatatttctaagaacttggaatt |
34549383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 34377542 - 34377711
Alignment:
| Q |
14 |
gagatgaagaccttttgttacgaaggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaatg |
113 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
34377542 |
gagatgaagaccttttggtacaatggaatcttgtacactccaggtatttatagaatttgtgtagaagataccaaatttgacatagatgaagatgttaatg |
34377641 |
T |
|
| Q |
114 |
aagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactatctcctt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34377642 |
aagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactttctcctt |
34377711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 135047 - 135344
Alignment:
| Q |
14 |
gagatgaagaccttttgttacgaaggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaatg |
113 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||| ||| || ||||| ||||| |||| ||||||||||||||||| || | ||||||||||||| |
|
|
| T |
135047 |
gagatgaagaccttttggttcgaaggaatcttatacaccccacgtctttatgaaatttctttaaaaaataccaaatttgacgaatacgaagatgttaatg |
135146 |
T |
|
| Q |
114 |
aagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattatt-----acaactatctccttttgtc--cctcctaactatgtctct |
206 |
Q |
| |
|
| |||||||||||||| |||||||||| | ||| ||||| |||||||| | || | || ||||||| |||| ||| ||||||||||||| |
|
|
| T |
135147 |
acgtgatacaacgacacaataaatgatcgagtg-ttggtatgaggtattacaactttctccgcctctttctccttctgtcttactcttaactatgtctct |
135245 |
T |
|
| Q |
207 |
ttcctcac--tcgtt-tataatctctggtttagagaagaatccatc----ttctttaatgcatgaatttctcaaagtttctttttccctattcttgaag |
298 |
Q |
| |
|
|||||| | ||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
135246 |
ttcctctcggtcgttctttcatctctggttttgagaagaacccatcttctttctttaatgcatgaatttctcaaagattatttttgcctattcttgaag |
135344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University