View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1592_low_3 (Length: 504)

Name: NF1592_low_3
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1592_low_3
NF1592_low_3
[»] chr5 (12 HSPs)
chr5 (130-364)||(3077251-3077477)
chr5 (134-210)||(8609203-8609279)
chr5 (13-64)||(3077135-3077186)
chr5 (137-210)||(8609932-8610005)
chr5 (143-210)||(27100353-27100420)
chr5 (129-199)||(42948159-42948229)
chr5 (131-208)||(19186963-19187040)
chr5 (130-207)||(19186432-19186510)
chr5 (452-489)||(3077490-3077527)
chr5 (143-210)||(27099551-27099618)
chr5 (131-203)||(4927753-4927825)
chr5 (130-182)||(23244357-23244409)
[»] chr8 (8 HSPs)
chr8 (130-212)||(39297411-39297493)
chr8 (130-210)||(5390140-5390220)
chr8 (226-401)||(39297232-39297426)
chr8 (129-209)||(39296738-39296822)
chr8 (438-489)||(39297186-39297237)
chr8 (129-190)||(5389670-5389731)
chr8 (131-188)||(42104612-42104669)
chr8 (132-176)||(42105243-42105287)
[»] chr2 (5 HSPs)
chr2 (134-210)||(529586-529662)
chr2 (129-202)||(528908-528981)
chr2 (136-209)||(18867097-18867170)
chr2 (130-180)||(8194276-8194326)
chr2 (143-210)||(29156163-29156230)
[»] chr6 (4 HSPs)
chr6 (129-210)||(13225195-13225276)
chr6 (130-210)||(11324750-11324830)
chr6 (130-210)||(13220880-13220960)
chr6 (137-210)||(30525638-30525711)
[»] chr3 (13 HSPs)
chr3 (129-210)||(40872920-40873001)
chr3 (130-210)||(15274023-15274103)
chr3 (131-210)||(40877243-40877322)
chr3 (129-210)||(15269702-15269783)
chr3 (129-209)||(31897948-31898028)
chr3 (129-209)||(31913657-31913737)
chr3 (129-209)||(31947305-31947385)
chr3 (154-212)||(36511315-36511373)
chr3 (145-209)||(23516935-23516999)
chr3 (143-210)||(33639624-33639691)
chr3 (150-189)||(36510775-36510814)
chr3 (143-186)||(40144848-40144891)
chr3 (143-205)||(55203685-55203747)
[»] chr4 (5 HSPs)
chr4 (137-210)||(22405307-22405380)
chr4 (144-210)||(42576614-42576680)
chr4 (130-180)||(53994450-53994500)
chr4 (130-180)||(53993662-53993712)
chr4 (143-196)||(15539847-15539900)
[»] chr7 (1 HSPs)
chr7 (130-210)||(12263333-12263413)
[»] chr1 (2 HSPs)
chr1 (143-210)||(19990287-19990354)
chr1 (129-210)||(29981267-29981348)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 130 - 364
Target Start/End: Original strand, 3077251 - 3077477
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgggtagttttcaaaaatatat 229  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3077251 gagaagggatgcgttgactccaagagcaagtataaagagttactccaaatcataaccattgattttaatattaattaatgggtagttttcaaaaaaatat 3077350  T
Q  230 taattaatgggtgtgattaattgctattgattctcattattaggttaatatactccttaagaaacccggcactagtgatctcggatggaaacaaatttct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||    
T  3077351 taattaatgggtgtgattaattgctattgattctcattattaggttaatgt--------agaaacccggcactagtgatctcggatggaaacaaatttct 3077442  T
Q  330 gatacaatattacttaaatcccaggcaagacagaa 364  Q
    |||||||||||||||||||||||||||||||||||    
T  3077443 gatacaatattacttaaatcccaggcaagacagaa 3077477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 8609203 - 8609279
Alignment:
Q  134 agggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||    
T  8609203 agggatccattgactccaagagtaagtataaatagttactccaaatcttagccattaattttaatattaattgatgg 8609279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 3077135 - 3077186
Alignment:
Q  13 tgagatgaacaaaaataatggctatagacaaacttgttcaagtgtataattg 64  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3077135 tgagatgaacaaaaataatggctatagacaaatttgttcaagtgtataattg 3077186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 8610005 - 8609932
Alignment:
Q  137 gatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||| ||||||| ||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||| ||||    
T  8610005 gatccattgactcaaagagtaagcataaagagttactccaaatcttgaccattaattttaatattaattcatgg 8609932  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 27100420 - 27100353
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||||||| | |||| |||||||||| ||| || |||||||||||||||| |||||||||    
T  27100420 ttgactccaagagtaactctaaaaagttactccacatcttagccattgattttaatatgaattaatgg 27100353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 42948229 - 42948159
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaata 199  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||| |||| | ||| || |||||||||    
T  42948229 tgagaagggatccattgactccaagagtaagtctaaagagttactcccaatcatgacctttaattttaata 42948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 19187040 - 19186963
Alignment:
Q  131 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaat 208  Q
    |||||| |||| ||||||||||||||||||  ||| | ||||||| |||| ||||||||||| || ||||||||||||    
T  19187040 agaaggaatccattgactccaagagtaagtcaaaagacttactcctaatcataaccattgatcttcatattaattaat 19186963  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 19186432 - 19186510
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaa-ccattgattttaatattaattaa 207  Q
    |||||| ||||  |||||||||||||||||| |||| | |||||||||||| ||| || |||||||||||| |||||||    
T  19186432 gagaagagatcaattgactccaagagtaagtctaaagacttactccaaatcttaaccctttgattttaatagtaattaa 19186510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 3077490 - 3077527
Alignment:
Q  452 gtttcaaaagtattacttgattttgtacacagattttg 489  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3077490 gtttcaatagtattacttgattttgtacacagattttg 3077527  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 27099551 - 27099618
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||||||| | |||| |||||||||| ||   |||| |||||||||||| ||||||||||    
T  27099551 ttgactccaagagtaactctaaagagttactccacattacaacccttgattttaatagtaattaatgg 27099618  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 4927753 - 4927825
Alignment:
Q  131 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaa 203  Q
    |||| |||||| |||| ||||||| ||||| |||| | ||||||| |||| | ||||||| ||||||||||||    
T  4927753 agaatggatccattgattccaagattaagtttaaagacttactcccaatcttgaccattggttttaatattaa 4927825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 23244409 - 23244357
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcct 182  Q
    ||||||||||   |||||||||||||||||| |||| |||||||||| |||||    
T  23244409 gagaagggatatattgactccaagagtaagtctaaagagttactccacatcct 23244357  T

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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 39297493 - 39297411
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgggt 212  Q
    |||||||||||| |||||| ||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  39297493 gagaagggatccattgacttcaatagtaagtataaagaattattccaaatcctaaccattgattttaatattaattaatgggt 39297411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 5390220 - 5390140
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||||| ||||||||||||||    
T  5390220 gagaagggatccattgactcctagagtaagtctaaagacttactccaaatcataaccattgattttgatattaattaatgg 5390140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 401
Target Start/End: Complemental strand, 39297426 - 39297232
Alignment:
Q  226 atattaattaatgggtgtgattaattgctattgattctcattattaggttaatatactcctt------aagaaacccggcactagtgatct--------- 310  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| | ||||||||||||||      ||| | | |||||| ||| ||||             
T  39297426 atattaattaatgggtgtgatgaattgctattaatcctcattatttgattaatatactccttcttcttaagcagctcggcaccagtaatcttacggaata 39297327  T
Q  311 cggatggaaacaaatttctgatacaatat----tacttaaatcccaggcaagacagaagtaataataattctgacacatggctagtatataaacc 401  Q
    ||||| ||||||||| |||||||||||||    || || ||||||| |||| |||||||||||||||||| || |||||||||||||||||||||    
T  39297326 cggattgaaacaaatatctgatacaatatatattaattcaatcccaagcaaaacagaagtaataataattttgtcacatggctagtatataaacc 39297232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 39296738 - 39296822
Alignment:
Q  129 tgagaagggatccgttgactccaagagta----agtataaatagttactccaaatcctaaccattgattttaatattaattaatg 209  Q
    ||||||| ||||| |||||||||||||||    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  39296738 tgagaagtgatccattgactccaagagtaagtaagtataaagagttactccaaatcctaacgattgatttaaatattaattaatg 39296822  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 39297237 - 39297186
Alignment:
Q  438 taaacctttatctagtttcaaaagtattacttgattttgtacacagattttg 489  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39297237 taaacctttatctagtttcatcagtattacttgattttgtacacagattttg 39297186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 5389670 - 5389731
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattg 190  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||||    
T  5389670 tgagaagggatccattgactccaagagtaagtctaaagacttactccaaatcataaccattg 5389731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 42104612 - 42104669
Alignment:
Q  131 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccat 188  Q
    ||||||||||||||||||||| |||||||| |||| | |||||||| ||| |||||||    
T  42104612 agaagggatccgttgactccaggagtaagtgtaaagacttactccacatcttaaccat 42104669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 42105287 - 42105243
Alignment:
Q  132 gaagggatccgttgactccaagagtaagtataaatagttactcca 176  Q
    |||||||||||||||||||| |||||||| |||| | ||||||||    
T  42105287 gaagggatccgttgactccaggagtaagtgtaaagacttactcca 42105243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 529662 - 529586
Alignment:
Q  134 agggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||| ||||    
T  529662 agggatccattgactccaagagtaagtataaagacttactccaaatcttagccattaattttaatattaattgatgg 529586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 528908 - 528981
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatatta 202  Q
    ||||||||||||| | ||||||||||||||||||||| | |||||||||||| | |||||| ||||||||||||    
T  528908 tgagaagggatccatggactccaagagtaagtataaagacttactccaaatcttgaccattaattttaatatta 528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 18867097 - 18867170
Alignment:
Q  136 ggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 209  Q
    ||||||||| | |||||||||||||||||| ||||| ||||||||||||  ||| |||||||| ||||||||||    
T  18867097 ggatccgttaattccaagagtaagtataaaaagttattccaaatcctaatgattaattttaatgttaattaatg 18867170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 8194326 - 8194276
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatc 180  Q
    |||||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  8194326 gagaagggatccattgactccaagagtaagtctaaagagttactccaaatc 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 29156163 - 29156230
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||||||| |  ||| |||||||||||||||| ||| || ||  ||||||||||||||||    
T  29156163 ttgactccaagagtaactcaaaagagttactccaaatcctgacccttcatcctaatattaattaatgg 29156230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 13225276 - 13225195
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  13225276 tgagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 13225195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 11324750 - 11324830
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  11324750 gagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 11324830  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 13220880 - 13220960
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  13220880 gagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 13220960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 30525638 - 30525711
Alignment:
Q  137 gatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||| |||||||||| ||||||| |||| |||||||||||| | | |||| | ||||||||| ||||||||||    
T  30525638 gatccattgactccaatagtaagtgtaaagagttactccaaaccatgaccactcattttaataataattaatgg 30525711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 40872920 - 40873001
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  40872920 tgagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 40873001  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 15274103 - 15274023
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  15274103 gagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 15274023  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 40877322 - 40877243
Alignment:
Q  131 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  40877322 agaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 40877243  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 15269702 - 15269783
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||||||||||| |||||||||||||||||| |||| | ||||| |||||| | |||||| ||||||||  ||||||||||    
T  15269702 tgagaagggatccattgactccaagagtaagtctaaacacttacttcaaatcatgaccattcattttaattataattaatgg 15269783  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 31898028 - 31897948
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 209  Q
    |||| |||||||| ||||||| ||||||||||| ||| |||||||||||||| | ||| |||| | |||||||||||||||    
T  31898028 tgaggagggatccattgactctaagagtaagtagaaagagttactccaaatcatgacccttgaatctaatattaattaatg 31897948  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 31913737 - 31913657
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 209  Q
    |||| |||||||| ||||||| ||||||||||| ||| |||||||||||||| | ||| |||| | |||||||||||||||    
T  31913737 tgaggagggatccattgactctaagagtaagtagaaagagttactccaaatcatgacccttgaatctaatattaattaatg 31913657  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 31947385 - 31947305
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 209  Q
    |||| |||||||| ||||||| ||||||||||| ||| |||||||||||||| | ||| |||| | |||||||||||||||    
T  31947385 tgaggagggatccattgactctaagagtaagtagaaagagttactccaaatcatgacccttgaatctaatattaattaatg 31947305  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 36511373 - 36511315
Alignment:
Q  154 agtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgggt 212  Q
    |||||||||||| || |||||||||| |||||| |||||||| ||||||||||||||||    
T  36511373 agtaagtataaagagatactccaaattctaacctttgattttgatattaattaatgggt 36511315  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 23516999 - 23516935
Alignment:
Q  145 gactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 209  Q
    |||||||||||||| | |||| |||||||||||||| | |||||| ||| |||| ||||||||||    
T  23516999 gactccaagagtaaatgtaaagagttactccaaatcttgaccattaattgtaatcttaattaatg 23516935  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 33639691 - 33639624
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||||||||| |||| | |||||||| ||| ||||| || ||||||| | ||||||||||    
T  33639691 ttgactccaagagtaagtctaaagacttactccagatcttaacccttcattttaaaaataattaatgg 33639624  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 36510775 - 36510814
Alignment:
Q  150 caagagtaagtataaatagttactccaaatcctaaccatt 189  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  36510775 caagagtaattataaagagttactccaaatcctaaccatt 36510814  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 40144891 - 40144848
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaacc 186  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||    
T  40144891 ttgacttcaagagtaagtctaaagagttactccaaatcctaacc 40144848  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 55203747 - 55203685
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaatt 205  Q
    ||||||| |||| |||||||||| |||||||||||||  |||||||| ||| | |||||||||    
T  55203747 ttgactctaagaataagtataaagagttactccaaattttaaccattaattgtgatattaatt 55203685  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 22405380 - 22405307
Alignment:
Q  137 gatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||| |||||| ||||||||||| |||||| |||||||||||| | |||||| ||||||||| ||||||||||    
T  22405380 gatccattgacttcaagagtaagtctaaatacttactccaaatcttgaccattcattttaataataattaatgg 22405307  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 42576680 - 42576614
Alignment:
Q  144 tgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||||||||||||||| |||| | |||||||||||  | ||| |||||||||||| ||||||||||    
T  42576680 tgactccaagagtaagtttaaaaacttactccaaatattgacccttgattttaatagtaattaatgg 42576614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 53994500 - 53994450
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatc 180  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||||||||    
T  53994500 gagaagggatccattgactccaggagtaagtctaaagagttactccaaatc 53994450  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 53993662 - 53993712
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatc 180  Q
    |||||||||||| || ||||||||||||||| |||| ||||||||| ||||    
T  53993662 gagaagggatccattaactccaagagtaagtctaaagagttactcccaatc 53993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 15539847 - 15539900
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgatttta 196  Q
    |||||||||||||||| |||||| |||||||||| ||||| ||| || ||||||    
T  15539847 ttgactccaagagtaactataaagagttactccacatcctcacccttcatttta 15539900  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 12263413 - 12263333
Alignment:
Q  130 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||| |||||||||||||||||| |||| | ||||| |||||| | |||||| ||||||||  ||||||||||    
T  12263413 gagaagggatccattgactccaagagtaagtctaaacacttactacaaatcatgaccattcattttaattataattaatgg 12263333  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 19990287 - 19990354
Alignment:
Q  143 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    |||||||||||||||||| |||| | ||||||||||||  |||| || || |||||| ||||||||||    
T  19990287 ttgactccaagagtaagtctaaagacttactccaaatctaaacccttcatcttaataataattaatgg 19990354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 29981267 - 29981348
Alignment:
Q  129 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 210  Q
    ||||||||||||| ||||||| |||||||||| |||| | |||||||  ||| ||||| |  |||||| ||||| |||||||    
T  29981267 tgagaagggatccattgactctaagagtaagtgtaaagacttactccgcatcttaaccctctattttattattagttaatgg 29981348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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