View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1592_low_4 (Length: 438)
Name: NF1592_low_4
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 41080939 - 41080530
Alignment:
| Q |
13 |
aatatgcagattacacacaactagcataatactgtatattggcataagagactccacaaatctccttgccaccatgatatcctctgaataaccatctcct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41080939 |
aatatgcagattacacacaactagcataatactgtatattggcataagagactccacaaatctcattgccaccatgatatcctctgaataaccatctcct |
41080840 |
T |
|
| Q |
113 |
tgctcacaatcaatcgactaaagaatgaaatgcaaacttctatgaattacaagcctcataaaaatgctgcttcttgnnnnnnntttaagcatgtacaata |
212 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41080839 |
tgctcacaatcaattgactaaagaatgaaatgcaaacttctatgaattacaagcctcataaaaatgctgcttcttgaaaaaa-tttaagcatgtacaata |
41080741 |
T |
|
| Q |
213 |
caaatctaagaccggtccccttcagttccagattcagaatggaggatcggtgctcattattctcttctgctactgcatcaaaaacagaagctgcattctg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41080740 |
caaatctaagaccggtccccttcagttccagattcagaatggaggatcggtgctcattattctcttctgctactgcatcaaaaacagaagctgcattctg |
41080641 |
T |
|
| Q |
313 |
acgctgcagcattgtcccctgcagaatgcaaaacacgtcatgtccacatcgacatgagaaaaactctgttattgcatgacatcatgatagcttggaaatc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41080640 |
acgctgcagcattgtcccctgcagaatgcaaaacacgtcatgtccacatcgacatgagaaaaactctgttattgcatgacttcatgatagcttggaaatc |
41080541 |
T |
|
| Q |
413 |
caagaagcaag |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
41080540 |
caagaagcaag |
41080530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 58 - 375
Target Start/End: Complemental strand, 41103310 - 41102977
Alignment:
| Q |
58 |
aagagactccacaaatctccttgccaccatgatatcctctgaataacc-------------atctccttgctcacaatcaatcgactaaagaatgaaatg |
144 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |||||||||| |||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
41103310 |
aagagactccacaaatctacttgtcaccatgatatccactgaataacccttcattggaaccatctccctgctcacaatcacttgactaaagaatgaaatg |
41103211 |
T |
|
| Q |
145 |
caaacttctatgaattacaagcctcataaaaatgctgcttcttgnnnnnnntttaagcatgtac----aatacaaatctaagaccggtccccttcagttc |
240 |
Q |
| |
|
|||||| ||| |||||||||| |||| |||||||| ||||||| ||||||| || || ||| ||| | ||||||| |||| |||| || |
|
|
| T |
41103210 |
caaactgctacgaattacaagtctcacaaaaatgccacttcttgaaaaaa-tttaagcctgcacgcacaatccaattttaagaccaaaccccatcagctc |
41103112 |
T |
|
| Q |
241 |
cagattcagaatggaggatcggtgctcattattctcttctgctactgcatcaaaaacagaagctgcattctgacgctgcagcattgtcccctgcagaatg |
340 |
Q |
| |
|
| |||| | ||||| | |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
41103111 |
cggattgaacatggaagctcggtgcttattattcccttctgccactgtgtcaaaaacagaagctgcattctgacagcgcagcagtgtcccctgcagaatg |
41103012 |
T |
|
| Q |
341 |
caaaacacgtcatgtccacatcgacatgagaaaaa |
375 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||| |
|
|
| T |
41103011 |
caaaacacttcatgtccacatcgacctgaggaaaa |
41102977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 1216457 - 1216376
Alignment:
| Q |
267 |
cattattctcttctgctactgcatcaaaaacagaagctgcattctgacgctgcagcattgtcccctgcagaatgcaaaacac |
348 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||||| | |||| | ||||||||||| |||||||||||| |
|
|
| T |
1216457 |
cattattctcttctgctactgcgtcaaaaatagaagctccattctgacaccgcagtagtgtcccctgcaaaatgcaaaacac |
1216376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 1216677 - 1216630
Alignment:
| Q |
58 |
aagagactccacaaatctccttgccaccatgatatcctctgaataacc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
1216677 |
aagagactccacaaatctccttgccaccattatatccgttgaataacc |
1216630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 41088882 - 41088836
Alignment:
| Q |
58 |
aagagactccacaaatctccttgccaccatgatatcctctgaataac |
104 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
41088882 |
aagagaccccataaatctccttaccaccatgatatcctctgaataac |
41088836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 1216619 - 1216545
Alignment:
| Q |
102 |
aaccatctccttgctcacaatcaatcgactaaagaatgaaatgcaaacttctatgaattacaagcctcataaaaa |
176 |
Q |
| |
|
|||| ||||| |||||||||||| | || |||||||| ||||||||| | ||| ||||||||| ||||| ||||| |
|
|
| T |
1216619 |
aaccttctccctgctcacaatcacttgagtaaagaattaaatgcaaattgctacgaattacaatcctcacaaaaa |
1216545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University