View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592_low_5 (Length: 339)
Name: NF1592_low_5
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 49916242 - 49915912
Alignment:
| Q |
5 |
gtgagatgaatggtaaatagtaagtatgctactaatcctactatatactctctccatacaaagtttaagcacaattctttctttattgtaaaagtatatt |
104 |
Q |
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| T |
49916242 |
gtgaaatgaatggtaaatagtaagtatgctactaatcctactatatactctctacatacaaagtttaagcacaattcttt----attgtaaaagtatatt |
49916147 |
T |
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| Q |
105 |
tctaatgtggtgtcattctcatctttgctttggccaccaatcaccataagatatatgtaacaggtgaggtgtgcttgtttgacaatgaaaggtgtgatta |
204 |
Q |
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| T |
49916146 |
tctaatgtggtgtcattctcatctttgctttggccaccaatcaccataagataaatgtaacaggtgaggtgggcttgtttgacaatgaaag--gtgatta |
49916049 |
T |
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| Q |
205 |
aacgtcataataaccatttgactcacaattatggggtctagttagtaattaggctgcaaataaacaaattagaatttgcatagtaacagtttg--tacca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49916048 |
aacgtcataataaccatttgactcacaattatggggtctagttagtaattaggctgcaaataaacaaattagaatttgcatagtaacagtttgtatacca |
49915949 |
T |
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| Q |
303 |
agaaatgaccnnnnnnntaaagcaagagtatttcata |
339 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
49915948 |
agaaatgaccaaaaaaataaagcaagagtatttcata |
49915912 |
T |
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