View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592_low_7 (Length: 304)
Name: NF1592_low_7
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 41482969 - 41483182
Alignment:
| Q |
14 |
gaagaagaagaggaaacatgtaagtactttgtcgtttctactgattaactttttatgttttgatac----------------taaaaattgatgaaatta |
97 |
Q |
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| T |
41482969 |
gaagaagaagaggaaacatgtaagtactttgtcgtttcttctgatttagtttttatgttttgatacaagtcagctttgctactaaaaattgatgaaatta |
41483068 |
T |
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| Q |
98 |
attactggattgaaaattcaaatcaactcttaacaactcttaacaactcttagcaactatatatatcaactttgaaattttcaatacaagaaaccctaat |
197 |
Q |
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| T |
41483069 |
attactggattgaaaattcaaatcaacgattaa----------caactcttagcaactatatatatcaactttgaaattttcaatacaagaaaccctaat |
41483158 |
T |
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| Q |
198 |
tgacatagaaatccctaatcctcc |
221 |
Q |
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| T |
41483159 |
tgacatagaaatccctaattctcc |
41483182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 53329052 - 53328994
Alignment:
| Q |
81 |
aaaaattgatgaaattaattactggattgaaaattcaaatcaactcttaacaactctta |
139 |
Q |
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| T |
53329052 |
aaaaattcatgaaattaattactggattgaaaattcaaatcaacgtttaacaactctta |
53328994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 53328943 - 53328902
Alignment:
| Q |
155 |
tatatatatcaactttgaaattttcaatacaagaaaccctaa |
196 |
Q |
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| T |
53328943 |
tatatatatcaaatttgaaaatttcaatacaagaaaccctaa |
53328902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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