View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592_low_8 (Length: 296)
Name: NF1592_low_8
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 11003607 - 11003379
Alignment:
| Q |
46 |
acattttcttttaaacatggtataaatggtaaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacaga--agaagnnnnnnnc |
143 |
Q |
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| T |
11003607 |
acattttcttttaaacatggtataaatggtcaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacagagaagaagaaaaaaac |
11003508 |
T |
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| Q |
144 |
tttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagac |
243 |
Q |
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| T |
11003507 |
tttgaggaagtcgtttggagaaaattacctgaaggtgc------acgacgttggttattgtaatcgaggatgtctgaataccaaccatgtttacaaagac |
11003414 |
T |
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| Q |
244 |
tattgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
11003413 |
tattgagccatgaaagttcaaatccataaaacatc |
11003379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 11000532 - 11000399
Alignment:
| Q |
145 |
ttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagact |
244 |
Q |
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| T |
11000532 |
ttgaggaagtcgtttggagaaaattacctaaacgtgcacaaccacgacgttggttattgtaatcgaggatttctgaataccaaccatgtttacaaaggct |
11000433 |
T |
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| Q |
245 |
attgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
11000432 |
attgagccatgaaagttcaaatccataaaacatc |
11000399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 10921610 - 10921674
Alignment:
| Q |
215 |
gtctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatct |
279 |
Q |
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| T |
10921610 |
gtctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatct |
10921674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 11034495 - 11034541
Alignment:
| Q |
233 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatct |
279 |
Q |
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| T |
11034495 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatct |
11034541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 11009082 - 11009139
Alignment:
| Q |
221 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
11009082 |
ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatc |
11009139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 10975113 - 10975175
Alignment:
| Q |
216 |
tctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
10975113 |
tctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatc |
10975175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 10987980 - 10988034
Alignment:
| Q |
224 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
10987980 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatc |
10988034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 11019148 - 11019202
Alignment:
| Q |
224 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
11019148 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatc |
11019202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 10905207 - 10905264
Alignment:
| Q |
221 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatc |
278 |
Q |
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| T |
10905207 |
ataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatc |
10905264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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