View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_high_12 (Length: 427)
Name: NF15930_high_12
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 70 - 407
Target Start/End: Original strand, 40602176 - 40602514
Alignment:
| Q |
70 |
agggtttagggtttaacctttt-catgcatttcaatttcagaaagtgagtcctccatcaaacttcacaatcgtgaaaggagcgcttgattccgaaggtcc |
168 |
Q |
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| T |
40602176 |
agggtttagggtttaacctttttcatgcatttcaatttcagaaagtgagtcctccatcaaacttcacaatcgtgaaaggagcgcttgattccgaaggtcc |
40602275 |
T |
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| Q |
169 |
tgttctgaagcgaaactacggcgaagaagaaatcagcatctacgtgatgcgattgaacaatatcggtgaagaacaagacggtgctattgatcaattgttc |
268 |
Q |
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| T |
40602276 |
tgttctgaagcgaaactacggcgaagaagaaatcagcatctacgtgatgcgattgaacaatatcggtgaagaacaagacggtgctattgatcaattgttc |
40602375 |
T |
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| Q |
269 |
attcatgttgatgtatctaaacctgaacagaaggaatcgttgaattttctttgtggtttgtatgaagatgctcttgggattcactctgtttctatgagac |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40602376 |
attcatgttgatgtatctaaacctgaacagaaggaatcgttgaattttctttgtggtttgtatgaagatgctcttgggattcactctgtttctatgagac |
40602475 |
T |
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| Q |
369 |
ctaagcttcttgattctagtggatacattctgactccta |
407 |
Q |
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| T |
40602476 |
ctaagcttcttgattctagtggatacattctgactccta |
40602514 |
T |
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