View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15930_high_17 (Length: 363)

Name: NF15930_high_17
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15930_high_17
NF15930_high_17
[»] chr7 (10 HSPs)
chr7 (7-353)||(9948839-9949193)
chr7 (93-197)||(28782014-28782120)
chr7 (93-196)||(9942602-9942707)
chr7 (114-197)||(11621380-11621465)
chr7 (110-196)||(1032232-1032320)
chr7 (127-197)||(40871301-40871371)
chr7 (237-265)||(9482965-9482993)
chr7 (150-194)||(12622906-12622950)
chr7 (237-265)||(20549822-20549850)
chr7 (237-265)||(22602710-22602738)
[»] chr2 (14 HSPs)
chr2 (93-197)||(12410782-12410888)
chr2 (93-197)||(12422842-12422948)
chr2 (89-196)||(2702258-2702368)
chr2 (93-197)||(6764415-6764521)
chr2 (93-196)||(37647960-37648065)
chr2 (116-196)||(27271658-27271740)
chr2 (111-189)||(34394492-34394572)
chr2 (110-196)||(11031810-11031898)
chr2 (237-265)||(5367223-5367251)
chr2 (237-265)||(20242727-20242755)
chr2 (237-265)||(34691805-34691833)
chr2 (237-265)||(34714217-34714245)
chr2 (237-265)||(35056899-35056927)
chr2 (237-265)||(44860351-44860379)
[»] chr4 (8 HSPs)
chr4 (93-196)||(43499292-43499397)
chr4 (93-195)||(36651742-36651846)
chr4 (93-193)||(7743567-7743669)
chr4 (110-196)||(39059723-39059811)
chr4 (93-193)||(42718566-42718669)
chr4 (142-197)||(48640782-48640837)
chr4 (127-193)||(37870649-37870715)
chr4 (129-197)||(9896507-9896575)
[»] scaffold0300 (1 HSPs)
scaffold0300 (93-197)||(9572-9678)
[»] chr1 (15 HSPs)
chr1 (93-197)||(4532086-4532192)
chr1 (93-196)||(51534478-51534583)
chr1 (93-196)||(33766351-33766456)
chr1 (110-197)||(19227886-19227975)
chr1 (93-197)||(13182639-13182745)
chr1 (127-197)||(34549394-34549464)
chr1 (127-197)||(45432373-45432443)
chr1 (115-189)||(33936450-33936526)
chr1 (127-174)||(31911571-31911618)
chr1 (142-196)||(28756478-28756532)
chr1 (237-265)||(30749871-30749899)
chr1 (237-265)||(30771322-30771350)
chr1 (237-265)||(34371744-34371772)
chr1 (237-265)||(44482261-44482289)
chr1 (237-265)||(52903280-52903308)
[»] chr8 (12 HSPs)
chr8 (110-196)||(45547912-45548000)
chr8 (93-197)||(24504049-24504155)
chr8 (99-197)||(8444262-8444359)
chr8 (110-196)||(45540328-45540413)
chr8 (146-197)||(25582580-25582631)
chr8 (132-197)||(4034300-4034365)
chr8 (236-265)||(8847287-8847316)
chr8 (144-197)||(13089765-13089818)
chr8 (237-265)||(4786338-4786366)
chr8 (237-265)||(11927086-11927114)
chr8 (111-196)||(24581449-24581536)
chr8 (237-265)||(26902175-26902203)
[»] chr5 (8 HSPs)
chr5 (45-197)||(22639506-22639660)
chr5 (93-196)||(39143220-39143325)
chr5 (93-196)||(19021384-19021489)
chr5 (112-196)||(6537091-6537176)
chr5 (127-189)||(22580397-22580459)
chr5 (232-265)||(3966534-3966567)
chr5 (237-265)||(30502388-30502416)
chr5 (237-265)||(30542731-30542759)
[»] chr6 (8 HSPs)
chr6 (129-197)||(12912247-12912315)
chr6 (129-197)||(6029362-6029430)
chr6 (110-195)||(24393922-24394009)
chr6 (127-195)||(165542-165610)
chr6 (237-265)||(7027273-7027301)
chr6 (237-265)||(7265593-7265621)
chr6 (237-265)||(9025494-9025522)
chr6 (237-265)||(21924935-21924963)
[»] scaffold0041 (1 HSPs)
scaffold0041 (127-197)||(94911-94981)
[»] scaffold0037 (1 HSPs)
scaffold0037 (127-196)||(1008-1077)
[»] chr3 (6 HSPs)
chr3 (142-196)||(15030113-15030167)
chr3 (237-265)||(7928481-7928509)
chr3 (237-265)||(8039835-8039863)
chr3 (142-174)||(20406426-20406458)
chr3 (237-265)||(25093533-25093561)
chr3 (237-265)||(40993335-40993363)
[»] scaffold0116 (1 HSPs)
scaffold0116 (233-262)||(9932-9961)
[»] scaffold0036 (1 HSPs)
scaffold0036 (237-265)||(9747-9775)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 9948839 - 9949193
Alignment:
Q  7 ttatgcgtgtcttattttgggtggttcacccctttcctttgcttaggaatttttaggtaaccggttagccttcnnnnnnnnncatattttggccatttgg 106  Q
    ||||||||||||||||   ||||||| | |||||| | |||||||||||| |||| ||||| || ||||||||         ||| |||||||| |||||    
T  9948839 ttatgcgtgtcttattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccttttgg 9948938  T
Q  107 ccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttcnnnnnnn 204  Q
    | ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  9948939 cactcttgtaattgactcttttagctggggttttggtactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttcaaaaaaa 9949038  T
Q  205 ntgtcggacacgtatcggtgtggatattgacgcgacaccgacacatataattacactgaat------annnnnnnnnnnnnnatatattattattggtgt 298  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||    
T  9949039 atgtcggacacgtatcggtgtggatattgacgcgacaccgacacatataattacactgaattttttattttttattttttttatatattattattggtgt 9949138  T
Q  299 cggcgtgttggtgtctatatcatatcctatctttgtgtcaatatttttgcttcat 353  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  9949139 cggcgtgttggtgtctatatcatatccgatgtttgtgtcaatatttttgcttcat 9949193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 28782120 - 28782014
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28782120 ttttggccttttggcactcttgtaattgactcttttagctggggttttggcactccttgtgctgaaatctccaggctttcagtattttaatccattttag 28782021  T
Q  191 tttcttc 197  Q
    |||||||    
T  28782020 tttcttc 28782014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 9942707 - 9942602
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||| ||  || || |||||||  ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  9942707 ttttggccttttggcactcttgtaattgactattttagttgaggttttgacactccttgtgctgaaatctccagactttcagtattttaatccattttag 9942608  T
Q  191 tttctt 196  Q
    ||||||    
T  9942607 tttctt 9942602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 11621380 - 11621465
Alignment:
Q  114 gtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    |||||||||||||  |||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||    
T  11621380 gtaattgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 11621465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 1032232 - 1032320
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    |||||||||||||||||  ||||||||||||   | ||| ||||||||||||| ||||||||||||| |||| |||| |||||||||||    
T  1032232 tcttgtaattgactctttcagctggggttttagcattccctgtgctgaaatctccaggctttcagtaatttagtccaatttagtttctt 1032320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 40871371 - 40871301
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||| |||||  ||||||||||||||||||| |||||||| | || | ||||||||||||| ||||||    
T  40871371 agctgggattttggcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 40871301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 9482993 - 9482965
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  9482993 cgacaccgacacatataattacactgaat 9482965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 12622950 - 12622906
Alignment:
Q  150 tgctgaaatcttcaggctttcagtattttaatccattttagtttc 194  Q
    |||| |||||| ||||||||||||| | |||||||||||||||||    
T  12622950 tgctaaaatctccaggctttcagtaatataatccattttagtttc 12622906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 20549850 - 20549822
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  20549850 cgacaccgacacatataattacactgaat 20549822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 22602710 - 22602738
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  22602710 cgacaccgacacatataattacactgaat 22602738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 12410782 - 12410888
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  12410782 ttttggccttttggcactcttgtaattgactcttttagctggggttttgtcactctttgtgatgaaatctccaggctttcagtattttaatccattttag 12410881  T
Q  191 tttcttc 197  Q
    |||||||    
T  12410882 tttcttc 12410888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 12422842 - 12422948
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  12422842 ttttggccttttggcactcttgtaattgactcttttagctggggttttgtcactctttgtgatgaaatctccaggctttcagtattttaatccattttag 12422941  T
Q  191 tttcttc 197  Q
    |||||||    
T  12422942 tttcttc 12422948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 2702368 - 2702258
Alignment:
Q  89 catattttggccattt-ggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccat 185  Q
    |||||||||||| ||| |||  |||||||||||||||||  |||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  2702368 catattttggccgttttggcattcttgtaattgactctttcagctggggttttggcactccttgtgctgaaatcttgaggctttcagtattttaatccat 2702269  T
Q  186 tttagtttctt 196  Q
    |||||||||||    
T  2702268 tttagtttctt 2702258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 6764415 - 6764521
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||||||  ||||||| ||||||||||| |  ||||||||||||||||||||||||||    
T  6764415 ttttggccttttggcactcttgtaattgactcttttagctggggttttgacactccttatgctgaaatctccgagctttcagtattttaatccattttag 6764514  T
Q  191 tttcttc 197  Q
    |||||||    
T  6764515 tttcttc 6764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 37647960 - 37648065
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||| | ||||||||||||||||||  ||||| |||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||||     
T  37647960 ttttggccttttgacactcttgtaattgactcttttagctgaggttttggcactccttgtgctgaaatctccaaactttcagtattttaatccattttaa 37648059  T
Q  191 tttctt 196  Q
    ||||||    
T  37648060 tttctt 37648065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 27271658 - 27271740
Alignment:
Q  116 aattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    |||||||||||  |||||| ||||||  ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  27271658 aattgactctttcagctggagttttgacactccttgtgctgaaatctccaggctttcagtaatttaatctattttagtttctt 27271740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 34394572 - 34394492
Alignment:
Q  111 cttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccatttta 189  Q
    ||||||||||||||||  |||||||||||||  |||||||||| ||||||||| |||||||||||| | |||| |||||||    
T  34394572 cttgtaattgactctttcagctggggttttggcactccttgtgttgaaatctttaggctttcagtaatataattcatttta 34394492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 11031810 - 11031898
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    ||||||| |||||||||  |||||||||||||  ||||||| ||||||||||| ||| |||||| || | | || |||||||| |||||    
T  11031810 tcttgtatttgactctttcagctggggttttggcactccttatgctgaaatctccagactttcaataatatcattcattttagcttctt 11031898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 5367251 - 5367223
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  5367251 cgacaccgacacatataattacactgaat 5367223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 20242727 - 20242755
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  20242727 cgacaccgacacatataattacactgaat 20242755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 34691805 - 34691833
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  34691805 cgacaccgacacatataattacactgaat 34691833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 34714217 - 34714245
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  34714217 cgacaccgacacatataattacactgaat 34714245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 35056927 - 35056899
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  35056927 cgacaccgacacatataattacactgaat 35056899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 44860379 - 44860351
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  44860379 cgacaccgacacatataattacactgaat 44860351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 43499292 - 43499397
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  43499292 ttttggccttttggcactcttgtaattgactcttttagctggggttttggcactccttgtgctgaaatctccaagctttcagtattttaatccattttag 43499391  T
Q  191 tttctt 196  Q
    ||||||    
T  43499392 tttctt 43499397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 36651846 - 36651742
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    ||||||||||||||| ||||||||| ||||||||  |||||||||||||  ||||||||||||||||||| ||  |||||  ||||||||||||||||||    
T  36651846 ttttggccatttggcactcttgtaactgactcttttagctggggttttggcactccttgtgctgaaatctccaaactttcgatattttaatccattttag 36651747  T
Q  191 tttct 195  Q
    |||||    
T  36651746 tttct 36651742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 7743567 - 7743669
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||| | ||||||||||||||||||  ||||   ||||||  ||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  7743567 ttttggccttttgacactcttgtaattgactcttttagcttaagttttggcactccttgtgctgaaatctccatgctttcagttttttaatccattttag 7743666  T
Q  191 ttt 193  Q
    |||    
T  7743667 ttt 7743669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 39059811 - 39059723
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    |||||||||| ||||||  |||| ||||||||  ||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  39059811 tcttgtaattaactctttcagcttgggttttggcactgcttgtgctgaattcttcagactttcagtaatttaatccattttagtttctt 39059723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 42718566 - 42718669
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttg-tgctgaaatcttcaggctttcagtattttaatccatttta 189  Q
    |||||||| |||||| ||||| ||||| ||||||  ||| ||||||||   |||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  42718566 ttttggccttttggcactcttataattaactcttttagccggggttttagcactccttggtgctgaaatctccaggctttcagttttttaatccatttta 42718665  T
Q  190 gttt 193  Q
    ||||    
T  42718666 gttt 42718669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 48640782 - 48640837
Alignment:
Q  142 actccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||||||||||||||||||||| ||||||| | || |||||||||||||||||    
T  48640782 actccttgtgctgaaatcttcaggcgttcagtaatatattccattttagtttcttc 48640837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 37870715 - 37870649
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagttt 193  Q
    |||||||||||||  ||||||||||||||||||| ||| |||| |||| | ||||||||||||||||    
T  37870715 agctggggttttggcactccttgtgctgaaatctccagactttgagtaatataatccattttagttt 37870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 9896575 - 9896507
Alignment:
Q  129 ctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    |||||||||||  |||||||||||| |||| | || ||||||| || ||| ||||||||||||||||||    
T  9896575 ctggggttttggcactccttgtgcttaaatttccaagctttcactaattttatccattttagtttcttc 9896507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 9572 - 9678
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    ||||||||||||||| ||||||||| ||||||||  ||||||| |||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  9572 ttttggccatttggcactcttgtaactgactcttttagctgggattttgacacttcttgtgctgaaatcttcaggcttttagtattttaatccattttag 9671  T
Q  191 tttcttc 197  Q
    |||||||    
T  9672 tttcttc 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 4532192 - 4532086
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    ||||||||||||||  ||||||||||||||||||  | |||||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  4532192 ttttggccatttggtactcttgtaattgactcttttacctggggttttggcactccttgtgctgaaatctccagactttcagtattttaatccattttag 4532093  T
Q  191 tttcttc 197  Q
    |||||||    
T  4532092 tttcttc 4532086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 51534583 - 51534478
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  ||| |||||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  51534583 ttttggccttttggcactcttgtaattgactcttttagcaggggttttggcactccttgtgctgaaatctccaggctttcggtattttaatccattttag 51534484  T
Q  191 tttctt 196  Q
    ||||||    
T  51534483 tttctt 51534478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 33766351 - 33766456
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||| | ||||||||||||||||||  | |||||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  33766351 ttttggccttttgacactcttgtaattgactcttttaactggggttttggcactccttgtgctgaaatctccagactttcagtattttaatccattttag 33766450  T
Q  191 tttctt 196  Q
    ||||||    
T  33766451 tttctt 33766456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 19227975 - 19227886
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||| |||||||||  |||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||    
T  19227975 tcttgtatttgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 19227886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 13182639 - 13182745
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||   |||||||||||||||||  || ||||||||||  ||||||| | ||||||| | ||||||||||||||||||||| ||||||     
T  13182639 ttttggccttttggaattcttgtaattgactcttttagttggggttttggcactccttatactgaaatttccaggctttcagtattttaatctattttaa 13182738  T
Q  191 tttcttc 197  Q
    |||||||    
T  13182739 tttcttc 13182745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 34549394 - 34549464
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    |||||||||||||  ||||||||||||||||||| ||| |||| |||| | ||||||||||||| ||||||    
T  34549394 agctggggttttggcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 34549464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 45432443 - 45432373
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    |||||||||||||  ||||||||||||||||||| ||| |||| |||| | ||||||||||||| ||||||    
T  45432443 agctggggttttggcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 45432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 33936450 - 33936526
Alignment:
Q  115 taattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccatttta 189  Q
    ||||||||||||  ||||||| |||||  ||||||||| ||||||||| ||| ||||||||| | ||||||||||||    
T  33936450 taattgactctttcagctgggattttggcactccttgtcctgaaatctccagactttcagtaatataatccatttta 33936526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 31911618 - 31911571
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagta 174  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  31911618 agctggcgttttgacactccttgtactgaaatcttcaggctttcagta 31911571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 28756532 - 28756478
Alignment:
Q  142 actccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    ||||||||||||||||||||||||| ||||||| | || | |||||||| |||||    
T  28756532 actccttgtgctgaaatcttcaggcattcagtaatatatttcattttagcttctt 28756478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 30749899 - 30749871
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  30749899 cgacaccgacacatataattacactgaat 30749871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 30771350 - 30771322
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  30771350 cgacaccgacacatataattacactgaat 30771322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 34371772 - 34371744
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  34371772 cgacaccgacacatataattacactgaat 34371744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 44482289 - 44482261
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  44482289 cgacaccgacacatataattacactgaat 44482261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 52903308 - 52903280
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  52903308 cgacaccgacacatataattacactgaat 52903280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 45547912 - 45548000
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    |||||||||||||||||  |||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  45547912 tcttgtaattgactctttcagctggggttttggcactccttgtgctgaaatctccaggctttcagtaatttaatccattttagtttctt 45548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 24504049 - 24504155
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| | ||||||||||||||||  ||||| |||||||  | |||||||||||||||||  | ||||||||| ||||||||||||||||    
T  24504049 ttttggccttttggcacacttgtaattgactcttttagctgaggttttggcattccttgtgctgaaatctctatgctttcagttttttaatccattttag 24504148  T
Q  191 tttcttc 197  Q
    |||||||    
T  24504149 tttcttc 24504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 8444359 - 8444262
Alignment:
Q  99 ccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    ||||||||| ||||||||||||||||||  | |||||||||||  |||| ||||||||||||||  ||||| |   ||||||||||||||||||||||||    
T  8444359 ccatttggcactcttgtaattgactcttttaactggggttttggcactctttgtgctgaaatctctaggctat---tattttaatccattttagtttctt 8444263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 45540328 - 45540413
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    ||||| |||||||||||  || ||||||||||  | |||||||||||||||||   ||||||||||| |||||||| ||||||||||||    
T  45540328 tcttgcaattgactcttttagttggggttttggcattccttgtgctgaaatct---ggctttcagtaatttaatccgttttagtttctt 45540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 25582631 - 25582580
Alignment:
Q  146 cttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||||||||| ||||||| ||||||| | || |||||||||||||||||    
T  25582631 cttgtgctgaaatattcaggcgttcagtaatatattccattttagtttcttc 25582580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 4034365 - 4034300
Alignment:
Q  132 gggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||||  |||||||||||| |||||||||| |||| |||| | |||| |||||||| ||||||    
T  4034365 gggttttggcactccttgtgctaaaatcttcagacttttagtaatataattcattttagcttcttc 4034300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 265
Target Start/End: Complemental strand, 8847316 - 8847287
Alignment:
Q  236 gcgacaccgacacatataattacactgaat 265  Q
    ||||||||||||||||||||||||||||||    
T  8847316 gcgacaccgacacatataattacactgaat 8847287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 13089818 - 13089765
Alignment:
Q  144 tccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||||||||||||| ||| |||| |||| | ||||||||||||| ||||||    
T  13089818 tccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 13089765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 4786338 - 4786366
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  4786338 cgacaccgacacatataattacactgaat 4786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 11927086 - 11927114
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  11927086 cgacaccgacacatataattacactgaat 11927114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 24581536 - 24581449
Alignment:
Q  111 cttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    ||||||||||| ||||  |||||||||||||  ||||||| | ||||||| ||||| |||||| || | |||| |||||||| |||||    
T  24581536 cttgtaattgattctttcagctggggttttgacactccttatactgaaatattcagactttcaataatataattcattttagcttctt 24581449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 26902175 - 26902203
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  26902175 cgacaccgacacatataattacactgaat 26902203  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 22639506 - 22639660
Alignment:
Q  45 ttgcttaggaatttttaggtaaccggttagccttcnnnnnnnnncatattttggccatttggccctcttgtaattgactctt--agctggggttttgtta 142  Q
    |||||||||||| |||| ||||| || ||||||||         ||| ||||||| ||||||| ||||||||| ||||||||  | |||||||||||  |    
T  22639506 ttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggctatttggcactcttgtaactgactcttttaactggggttttggca 22639605  T
Q  143 ctccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||    
T  22639606 ctccttgtgatgaaatctccaaactttcagtattttaatccattttagtttcttc 22639660  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 39143325 - 39143220
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| |||||| ||||||||||||||||||  ||||  | |||||  ||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  39143325 ttttggccttttggcactcttgtaattgactcttttagctatgattttggcactccttatgctgaaatctccaggctttcggtattttaatccattttag 39143226  T
Q  191 tttctt 196  Q
    ||||||    
T  39143225 tttctt 39143220  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 19021384 - 19021489
Alignment:
Q  93 ttttggccatttggccctcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttag 190  Q
    |||||||| || ||| ||||||||||||||||||  |||||||||||||  ||||||| | ||||||||| || ||||||| || |||||||||||||||    
T  19021384 ttttggcctttcggcactcttgtaattgactcttttagctggggttttggcactccttatactgaaatctccaagctttcaataatttaatccattttag 19021483  T
Q  191 tttctt 196  Q
    ||||||    
T  19021484 tttctt 19021489  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 6537091 - 6537176
Alignment:
Q  112 ttgtaattgactctt-agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    ||||||||||||||| ||||  | |||||  ||||||| ||||||||||| |||  |||||||| ||| |||||||||||||||||    
T  6537091 ttgtaattgactctttagcttagattttggcactccttatgctgaaatctccagagtttcagtaatttcatccattttagtttctt 6537176  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 22580459 - 22580397
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccatttta 189  Q
    |||||||||||||  ||| ||||| |||||||||| |||||||||||| | || |||||||||    
T  22580459 agctggggttttgacacttcttgtactgaaatctttaggctttcagtaatatattccatttta 22580397  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 3966567 - 3966534
Alignment:
Q  232 tgacgcgacaccgacacatataattacactgaat 265  Q
    |||| |||||||||||||||||||||||||||||    
T  3966567 tgacacgacaccgacacatataattacactgaat 3966534  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 30502388 - 30502416
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  30502388 cgacaccgacacatataattacactgaat 30502416  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 30542731 - 30542759
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  30542731 cgacaccgacacatataattacactgaat 30542759  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 12912315 - 12912247
Alignment:
Q  129 ctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    |||||||||||  ||||||||||||||||||| ||| |||| |||| | ||||||||||||| ||||||    
T  12912315 ctggggttttgacactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 12912247  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 6029362 - 6029430
Alignment:
Q  129 ctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||| |||||  |||||||||||||||||||||||  |||||||| | || |||||||||| ||||||    
T  6029362 ctgggattttggcactccttgtgctgaaatcttcagattttcagtaatatattccattttagcttcttc 6029430  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 24393922 - 24394009
Alignment:
Q  110 tcttgtaattgactctt--agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttct 195  Q
    |||||||||||||||||  ||||  |||||||  |||||||||||||||||||  ||||||| |||| | ||||| ||||||| ||||    
T  24393922 tcttgtaattgactctttcagctaaggttttggcactccttgtgctgaaatctcaaggcttttagtaatataatcaattttagcttct 24394009  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 165542 - 165610
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttct 195  Q
    |||||||||||||  ||| |||||||||||||||  || |||| | || | ||||||||||||||||||    
T  165542 agctggggttttgacacttcttgtgctgaaatctcaagacttttaataatataatccattttagtttct 165610  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 7027301 - 7027273
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  7027301 cgacaccgacacatataattacactgaat 7027273  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 7265593 - 7265621
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  7265593 cgacaccgacacatataattacactgaat 7265621  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 9025494 - 9025522
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  9025494 cgacaccgacacatataattacactgaat 9025522  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 21924935 - 21924963
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  21924935 cgacaccgacacatataattacactgaat 21924963  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 94911 - 94981
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 197  Q
    ||||||| |||||  ||||||||||||||||||| |||||||| | || | ||||||||||||| ||||||    
T  94911 agctgggattttggcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 94981  T

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Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 1008 - 1077
Alignment:
Q  127 agctggggttttgttactccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    |||||||||||||| ||||||| ||||||||||| ||| ||||  ||| | ||||||||||||| |||||    
T  1008 agctggggttttgtcactccttatgctgaaatctccagactttttgtaatataatccattttagcttctt 1077  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 15030113 - 15030167
Alignment:
Q  142 actccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttctt 196  Q
    |||| |||||||||||||||||||||||||||| | || || |||||||| ||||    
T  15030113 actctttgtgctgaaatcttcaggctttcagtaatatattctattttagtctctt 15030167  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 7928509 - 7928481
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  7928509 cgacaccgacacatataattacactgaat 7928481  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 8039835 - 8039863
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  8039835 cgacaccgacacatataattacactgaat 8039863  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 20406426 - 20406458
Alignment:
Q  142 actccttgtgctgaaatcttcaggctttcagta 174  Q
    ||||||||||||||||||||||||| |||||||    
T  20406426 actccttgtgctgaaatcttcaggcgttcagta 20406458  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 25093561 - 25093533
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  25093561 cgacaccgacacatataattacactgaat 25093533  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 40993335 - 40993363
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  40993335 cgacaccgacacatataattacactgaat 40993363  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 9961 - 9932
Alignment:
Q  233 gacgcgacaccgacacatataattacactg 262  Q
    ||||||||||||||||||||||||||||||    
T  9961 gacgcgacaccgacacatataattacactg 9932  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 9747 - 9775
Alignment:
Q  237 cgacaccgacacatataattacactgaat 265  Q
    |||||||||||||||||||||||||||||    
T  9747 cgacaccgacacatataattacactgaat 9775  T

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