View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15930_high_18 (Length: 359)
Name: NF15930_high_18
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 3849650 - 3849979
Alignment:
| Q |
16 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatcacggagcccacgtctaccctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3849650 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatcacggagcccacatctaccctc |
3849749 |
T |
|
| Q |
116 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3849750 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttac |
3849849 |
T |
|
| Q |
216 |
gagaaagaatttaattggtgaatattaggagttatgttggcagcaattgcagttgccctagcaagagcagttaacatttattattatgtaggtgaagata |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3849850 |
gagaaagaatttaattggtgagtattaggagttatgttggcagcaattgcagttgccctagcaagagcagttaacatttattattatgtaggtgaagata |
3849949 |
T |
|
| Q |
316 |
tgaggatttatgttggttgtagttgaactt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3849950 |
tgaggatttatgttggttgtagttgaactt |
3849979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 35399938 - 35399609
Alignment:
| Q |
16 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatcacggagcccacgtctaccctc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
35399938 |
ataagaccgttagatttaattaatgatctaaatctgctaaaaataaaaatgagagcatatacaattctgacactgtatcacggaccccacttctaccctc |
35399839 |
T |
|
| Q |
116 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35399838 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcagtagtgcaatttcttgagggctcttgtaaagtttat |
35399739 |
T |
|
| Q |
216 |
gagaaagaatttaattggtgaatattaggagttatgttggcagcaattgcagttgccctagcaagagcagttaacatttattattatgtaggtgaagata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35399738 |
gagaaagaatttaattggtgaatattaggagttatgttggcagcaattgcagttgccctaacaagagcagttaacatttattattatgtaggtgaagata |
35399639 |
T |
|
| Q |
316 |
tgaggatttatgttggttgtagttgaactt |
345 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
35399638 |
tgaggatttatgttggcagtagttgaactt |
35399609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 345
Target Start/End: Original strand, 22632583 - 22632757
Alignment:
| Q |
169 |
aaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttacgagaaagaatttaattggtga--atattaggagttatgttggcagcaattgca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||| | ||||| |
|
|
| T |
22632583 |
aaggtgcttcaatagtgcaatttcttgagggctcttgtaaa-ttgacgagaaagaatttaatcggtgaagatattagtagttatgttggcagtatttgca |
22632681 |
T |
|
| Q |
267 |
gttgccctagcaagagcagttaacatttattattatgtaggtgaagatatgaggatttatgttggttgtagttgaactt |
345 |
Q |
| |
|
|||||||| ||||||| ||| || ||||||||||| ||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
22632682 |
gttgccct---aagagcatataatatgtattattatgttggtgaagatatgaggatttatgttggtagtagtttaactt |
22632757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 22632375 - 22632454
Alignment:
| Q |
16 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatca |
95 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| || ||||||| ||||||| | ||||||| ||||||||||||| |
|
|
| T |
22632375 |
ataaaaccgttagatttaattaatgatctagatctgttataaataaaagtgagagcgtttacaattgtcacactgtatca |
22632454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 32350344 - 32350258
Alignment:
| Q |
180 |
atagtgcaatttcttgagggctcttgtaaagtttacgagaaagaatttaattggtga--atattaggagttatgttggcagcaattg |
264 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||||||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
32350344 |
atagtgcaatttttttagggctcttgcaaatttgacgagaaagaatttaattggtgaagatatgaggagttatgttggtagtaattg |
32350258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 32367005 - 32366919
Alignment:
| Q |
180 |
atagtgcaatttcttgagggctcttgtaaagtttacgagaaagaatttaattggtga--atattaggagttatgttggcagcaattg |
264 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||||||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
32367005 |
atagtgcaatttttttagggctcttgcaaatttgacgagaaagaatttaattggtgaagatatgaggagttatgttggtagtaattg |
32366919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University