View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_high_28 (Length: 219)
Name: NF15930_high_28
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 4402872 - 4403035
Alignment:
| Q |
21 |
atcaagtccaaagtttttgtccttttcaattttgacaccatctcaaccttcatatcagcaacaaccttcatcagttattcatttctagaaataatatttt |
120 |
Q |
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| T |
4402872 |
atcaagtccaaagtttttgtccttttcaattttgacaccatctcaaccttcatatcagcaacaaccttcatcagttattcatttctagaaataatatttt |
4402971 |
T |
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| Q |
121 |
ctatgagctgcattttccttttcatgtttctccgtcatcttctacatcaagttcacctttacct |
184 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4402972 |
ctatgagctgcattttccttttcatgtttcttcgtcatcttctacatcaagttcacctttacct |
4403035 |
T |
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