View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15930_high_29 (Length: 216)

Name: NF15930_high_29
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15930_high_29
NF15930_high_29
[»] chr3 (22 HSPs)
chr3 (13-198)||(35139015-35139209)
chr3 (13-169)||(43402131-43402285)
chr3 (13-169)||(43404074-43404228)
chr3 (13-169)||(54593377-54593532)
chr3 (13-169)||(55302306-55302460)
chr3 (36-169)||(6095940-6096072)
chr3 (13-169)||(30235798-30235952)
chr3 (13-169)||(49199812-49199966)
chr3 (36-169)||(47303947-47304079)
chr3 (13-146)||(36018523-36018656)
chr3 (37-169)||(1683184-1683315)
chr3 (24-155)||(46860154-46860284)
chr3 (13-169)||(34490886-34491040)
chr3 (13-169)||(40913011-40913166)
chr3 (13-169)||(28074290-28074443)
chr3 (27-169)||(41819863-41820003)
chr3 (25-176)||(34795554-34795704)
chr3 (13-109)||(4569624-4569719)
chr3 (13-197)||(26323823-26324008)
chr3 (24-198)||(39127243-39127417)
chr3 (44-156)||(41509960-41510071)
chr3 (117-176)||(20937433-20937492)
[»] scaffold0002 (1 HSPs)
scaffold0002 (7-197)||(490755-490946)
[»] chr7 (16 HSPs)
chr7 (13-169)||(6431644-6431798)
chr7 (13-180)||(5116307-5116473)
chr7 (13-161)||(4512739-4512884)
chr7 (13-169)||(34311057-34311212)
chr7 (13-169)||(2389955-2390109)
chr7 (13-156)||(22269647-22269787)
chr7 (13-109)||(29608414-29608509)
chr7 (16-169)||(3258671-3258823)
chr7 (13-146)||(32358199-32358331)
chr7 (24-155)||(22328753-22328884)
chr7 (13-109)||(6360312-6360407)
chr7 (13-91)||(48599742-48599819)
chr7 (13-169)||(2361312-2361466)
chr7 (13-169)||(4509047-4509192)
chr7 (13-169)||(4510889-4511034)
chr7 (79-107)||(37545308-37545336)
[»] chr2 (10 HSPs)
chr2 (7-197)||(42261920-42262111)
chr2 (13-169)||(33647841-33647997)
chr2 (13-198)||(30218343-30218529)
chr2 (13-161)||(45726603-45726748)
chr2 (13-142)||(17450264-17450391)
chr2 (36-169)||(42288451-42288582)
chr2 (13-169)||(1632073-1632227)
chr2 (24-155)||(24397740-24397871)
chr2 (14-169)||(7450975-7451127)
chr2 (13-169)||(35447225-35447379)
[»] chr4 (32 HSPs)
chr4 (14-161)||(38811428-38811573)
chr4 (13-169)||(6655629-6655783)
chr4 (13-169)||(27417292-27417446)
chr4 (13-162)||(35370684-35370833)
chr4 (13-169)||(8665080-8665234)
chr4 (34-161)||(35369787-35369914)
chr4 (36-169)||(35662137-35662269)
chr4 (13-169)||(55085706-55085861)
chr4 (13-169)||(12073066-12073219)
chr4 (36-169)||(40630679-40630811)
chr4 (13-169)||(50263039-50263193)
chr4 (13-169)||(54882693-54882847)
chr4 (10-169)||(2209378-2209535)
chr4 (13-109)||(10071558-10071653)
chr4 (13-109)||(41964089-41964185)
chr4 (13-172)||(46569884-46570041)
chr4 (27-169)||(33089585-33089726)
chr4 (24-169)||(33989546-33989689)
chr4 (13-109)||(8653273-8653368)
chr4 (13-156)||(46703174-46703315)
chr4 (69-169)||(8647866-8647965)
chr4 (17-169)||(26363942-26364092)
chr4 (13-109)||(50674246-50674341)
chr4 (13-180)||(22883082-22883248)
chr4 (13-180)||(22934746-22934912)
chr4 (36-109)||(10071966-10072039)
chr4 (13-156)||(26699799-26699943)
chr4 (13-158)||(379051-379195)
chr4 (40-150)||(3785790-3785899)
chr4 (69-176)||(25723550-25723656)
chr4 (86-169)||(34112357-34112439)
chr4 (40-96)||(32091270-32091326)
[»] chr5 (16 HSPs)
chr5 (37-197)||(316462-316623)
chr5 (14-169)||(28277989-28278143)
chr5 (24-156)||(35615855-35615986)
chr5 (13-161)||(16642227-16642372)
chr5 (13-169)||(213141-213296)
chr5 (36-169)||(40146956-40147088)
chr5 (13-169)||(38746678-38746832)
chr5 (13-169)||(5057721-5057874)
chr5 (13-169)||(27015205-27015359)
chr5 (13-169)||(30802614-30802768)
chr5 (71-169)||(10055047-10055144)
chr5 (85-176)||(33906362-33906452)
chr5 (24-169)||(30792924-30793066)
chr5 (82-148)||(14689769-14689834)
chr5 (85-169)||(21205993-21206076)
chr5 (13-109)||(27638015-27638109)
[»] chr1 (24 HSPs)
chr1 (24-180)||(9109731-9109886)
chr1 (13-169)||(7482571-7482726)
chr1 (13-167)||(29135921-29136073)
chr1 (13-169)||(28242061-28242215)
chr1 (33-176)||(41135513-41135655)
chr1 (36-169)||(37167992-37168124)
chr1 (13-169)||(34603249-34603403)
chr1 (42-169)||(37033414-37033540)
chr1 (13-109)||(47255734-47255829)
chr1 (36-169)||(42298316-42298448)
chr1 (13-169)||(11348371-11348525)
chr1 (13-169)||(34602680-34602834)
chr1 (36-109)||(6808142-6808216)
chr1 (82-156)||(28318112-28318186)
chr1 (36-109)||(13547489-13547562)
chr1 (36-109)||(13549400-13549473)
chr1 (36-169)||(193307-193438)
chr1 (36-169)||(37879252-37879384)
chr1 (36-109)||(31928208-31928281)
chr1 (36-169)||(47114867-47114998)
chr1 (36-155)||(19752381-19752498)
chr1 (102-156)||(10157379-10157433)
chr1 (82-155)||(3331285-3331357)
chr1 (13-169)||(19754164-19754318)
[»] scaffold0466 (1 HSPs)
scaffold0466 (13-169)||(7001-7155)
[»] scaffold0286 (1 HSPs)
scaffold0286 (13-169)||(11231-11385)
[»] chr8 (14 HSPs)
chr8 (13-156)||(2999874-3000016)
chr8 (13-163)||(11383659-11383807)
chr8 (13-169)||(42435332-42435486)
chr8 (24-176)||(40585408-40585560)
chr8 (36-162)||(22976229-22976354)
chr8 (13-109)||(4283219-4283314)
chr8 (13-169)||(44353468-44353619)
chr8 (38-169)||(40328476-40328606)
chr8 (13-114)||(20686452-20686552)
chr8 (40-169)||(40221444-40221572)
chr8 (26-143)||(40535538-40535652)
chr8 (85-169)||(3846159-3846241)
chr8 (85-157)||(10101512-10101583)
chr8 (82-167)||(3817675-3817761)
[»] chr6 (10 HSPs)
chr6 (36-169)||(21593361-21593493)
chr6 (13-169)||(3809049-3809204)
chr6 (39-169)||(603421-603550)
chr6 (13-169)||(5043301-5043454)
chr6 (13-169)||(2973280-2973435)
chr6 (36-162)||(22425173-22425300)
chr6 (24-176)||(25072869-25073019)
chr6 (24-156)||(26800454-26800585)
chr6 (13-109)||(26830524-26830619)
chr6 (14-109)||(17762661-17762755)
[»] scaffold0014 (1 HSPs)
scaffold0014 (13-169)||(80624-80778)
[»] scaffold0176 (1 HSPs)
scaffold0176 (36-162)||(18348-18474)
[»] scaffold0197 (1 HSPs)
scaffold0197 (24-109)||(1805-1890)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 35139209 - 35139015
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgt-------gaatcttggagaaccaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||       |||||||||||||||||    
T  35139209 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatgaggttcaaaactttaagatgtaagatgtgaatcttggagaaccaa 35139110  T
Q  106 aagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaat--gagtctttatgagcaacttga 198  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  35139109 aagaaatgggttcttcggaaagggttgatgccttttgaggagagattcatgaggttggaaaacaaatcaaatgagagtctttatgagcaacttga 35139015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 43402285 - 43402131
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  43402285 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 43402188  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  43402187 gggctcttgagaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 43402131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 43404228 - 43404074
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||| ||||| |||||| |||| ||||||||||||| ||||||||||||| | |  ||||||||  || ||||||||||||||||||||||||||| | |    
T  43404228 caaatgagggaacttttagggt-tttagatactaaaagttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaag-agg 43404131  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  43404130 gggctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaaca 43404074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 54593377 - 54593532
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||||| ||||||||||| |||||||||| || | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  54593377 caaaggagggaacttttagggtatgtagatactaaaggttgagggtccttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 54593475  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| | ||||||||||| ||||||||| || |||||||||    
T  54593476 gggctcttgggaaaagggttggtaccttttgggga-agattcatggggatggaaaaca 54593532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 55302460 - 55302306
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||  |||||| |||| ||||||||||||| ||||||||||||| |||  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  55302460 caaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 55302363  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | | |||| || ||||||||| |||||||| |||| | ||||||||||||||||||||    
T  55302362 gagctcttgggaaaagggttggtgcctttt-gggaaaaattcatgaggttggaaaaca 55302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 6096072 - 6095940
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatg 135  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||  ||| |  || | ||||||||| ||    
T  6096072 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttttgaaaagggttggtg 6095973  T
Q  136 ccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||||| ||||||||| |||||| |||||    
T  6095972 ccttttgggga-agattcatggggttgggaaaca 6095940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 30235798 - 30235952
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  30235798 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 30235895  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  30235896 gggctcttgtgaaaagggttggtgccttttgggga-atattcatggggttggaaaaca 30235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 49199966 - 49199812
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  ||||||||  || ||||||||||||||||||||||||||||  |    
T  49199966 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagaggg 49199868  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    || |  |  | ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  49199867 ggctattgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 49199812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 47303947 - 47304079
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgat 134  Q
    ||||||||||||| ||||| ||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |||| |||| || ||||||||| |    
T  47303947 tttagatactaaatgttgaaggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaagggttggt 47304045  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||||||||| ||||||||| |||||| |||||    
T  47304046 gccttttgggga-agattcatggggttgggaaaca 47304079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 36018523 - 36018656
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||  |||||| ||||||||||| ||||||||||||| |||  |||||||| ||| ||||||||||||||||||||||||||||  |    
T  36018523 caaaggagagaactttcagggtatgtagatactaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 36018622  T
Q  113 gggttcttcggaaagggttgatgccttttgggga 146  Q
     | || |  | ||||||||| |||||||||||||    
T  36018623 agcttttgggaaaagggttggtgccttttgggga 36018656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 1683184 - 1683315
Alignment:
Q  37 ttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgc 136  Q
    ||||| |||||| ||||||||||||| | |  | ||||||  ||| | ||||||||||||||||||||||||| | || || |||||||||||||| |||    
T  1683184 ttagaaactaaaggttgagggtctttgggtgagattcaaatgtttcaaatgtgaatcttggagaaccaaaagagaaggttt-ttcggaaagggttggtgc 1683282  T
Q  137 cttttggggagagattcatgaggttggaaaaca 169  Q
     ||||||| ||||||||||| ||||||||||||    
T  1683283 attttgggaagagattcatggggttggaaaaca 1683315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 46860154 - 46860284
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| | ||||||||||||||||||||||||| | |||| |||| ||    
T  46860154 acttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaag-agggggctcttggg 46860252  T
Q  124 -aaagggttgatgccttttggggagagattcat 155  Q
     ||||||||| ||||||||||||| ||||||||    
T  46860253 aaaagggttggtgccttttgggga-agattcat 46860284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 34490886 - 34491040
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  34490886 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 34490983  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| |||||||||| || |||||||||  |||| ||||||    
T  34490984 gggctcttgtgaaaagggttggtgccttttggaga-agattcatggagttgaaaaaca 34491040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 40913011 - 40913166
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||| ||||||||| | |  |||||||| ||| || |||||||||||||||||||||||| | |    
T  40913011 caaaggaggggacttttagggt-tttagatactaaaggtttagggtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaag-agg 40913108  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| |||||||| ||   ||||||||| |||||| |||||    
T  40913109 gggctcttgggaaaagggttggtgcctttttggagaagattcatggggttgggaaaca 40913166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 28074290 - 28074443
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||  |||||| |||| ||||||||||||| ||||||||||||| | |  ||||||||  || ||||||||||||||||||||||||||| | |    
T  28074290 caaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaag-agg 28074387  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| |||||  |||| ||| ||||||||| ||||||||| || ||| |||||    
T  28074388 gggctcttgggaaatagttggtgcgttttgggga-agattcatggggatgggaaaca 28074443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 41820003 - 41819863
Alignment:
Q  27 ttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aa 125  Q
    |||| ||| ||||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||| |||||||||||| | |||| |||| || ||    
T  41820003 ttttaggtttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttagagaaccaaaag-agggggctcttgggaaa 41819905  T
Q  126 agggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||| |||||||||||   ||||||||| |||||| |||||    
T  41819904 agggttggtgccttttggg--aagattcatggggttgggaaaca 41819863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 34795554 - 34795704
Alignment:
Q  25 ctttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgga 124  Q
    ||||| |||||||||||||||||| ||||| |||| || | |   ||||||| ||| ||||| ||||||||||||||||| ||||  ||||||||  |||    
T  34795554 cttttagggtatttagatactaaaggttgatggtcgttgggtgatgttcaaagcttcaagatctgaatcttggagaaccagaagag-ggggttctaggga 34795652  T
Q  125 aagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa 176  Q
     ||| || |||||||||| ||||||||||||| |||||| | ||| ||||||    
T  34795653 gaggtttcatgccttttgaggagagattcatggggttgggatacacatcaaa 34795704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 4569624 - 4569719
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||| |||||||||||| |||||||    
T  4569624 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaatcttggagaatcaaaaga 4569719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 26324008 - 26323823
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||  ||||||  | ||||||||||||||| |||||||||| || | |   ||||||| ||| ||||||| ||||||| |||| ||||||| |     
T  26324008 caaaggaggaaacttttaagatatttagatactaaaggttgagggtcattgggtgaagttcaaagcttcaagatgtaaatcttgaagaatcaaaagaga- 26323910  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa--tgagtctttatgagcaacttg 197  Q
    ||| | || ||||||||||| ||| ||||  | ||||||||||| |||||  ||||| ||||||   |||||||| |||||||||||    
T  26323909 gggctattgggaaagggttggtgcattttcagcagagattcatggggttgagaaacacatcaaaggagagtctttgtgagcaacttg 26323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 39127243 - 39127417
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| ||||||||| |||||||| |||  ||| |||| | |  |||||||| ||| ||||| |||||||| |||||| |||| |  |||  |||| |     
T  39127243 acttttagggtatttacatactaaaggtttggggcctttgg-tgaggttcaaagcttcaagatatgaatcttagagaactaaaatag-gggactcttgga 39127340  T
Q  124 aaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaa--atgagtctttatgagcaacttga 198  Q
    | || |||| |||||||| ||||||||||||||||||||| ||||| |||||  |||||||||| || |||||||||    
T  39127341 agagagttggtgcctttttgggagagattcatgaggttgggaaacacatcaaatatgagtctttgtgggcaacttga 39127417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 41509960 - 41510071
Alignment:
Q  44 ctaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttgg 143  Q
    ||||| ||| |||||||||||||  | ||||||   | ||||||||||| ||||| |||||||| | || | || || |||||||||| ||||||||| |    
T  41509960 ctaaaggttaagggtctttagatgagattcaaatggtcaagatgtgaatattggaaaaccaaaaaagagagctt-ttaggaaagggttaatgccttttag 41510058  T
Q  144 ggagagattcatg 156  Q
    |||||||||||||    
T  41510059 ggagagattcatg 41510071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 20937433 - 20937492
Alignment:
Q  117 tcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa 176  Q
    |||| ||||| ||||| ||||||||| ||||||||||||| ||||| |||||| ||||||    
T  20937433 tcttaggaaaaggttggtgccttttgaggagagattcatgtggttgaaaaacacatcaaa 20937492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 490946 - 490755
Alignment:
Q  7 gagaagcaaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaa 106  Q
    ||||| ||||||||||  ||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||||||||||||||    
T  490946 gagaaccaaaggagggagcttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaa 490847  T
Q  107 agaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa--tgagtctttatgagcaacttg 197  Q
    | || |||| |||| ||| ||||||| ||||||| || |||||||||||| | |||| ||||| ||||||   |||| |||||||||||||||    
T  490846 a-aagggggctctttggagagggttggtgcctttaggtgagagattcatgggattgggaaacacatcaaaggagagtttttatgagcaacttg 490755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 6431644 - 6431798
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||||||| ||||||||||||||||||||||||||| | |    
T  6431644 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaag-agg 6431741  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  ||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  6431742 gggctcttggggaaagggttggtgccttttgggga-agattcatggggttggaaaaca 6431798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 5116307 - 5116473
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| ||||||||| |||||||| ||||||||||||||| |   ||||||||||| |||||||||||||| |||||||||||| | |    
T  5116307 caaaggaggggacttttagggtatttaaatactaaaggttgagggtctttaggtgatgttcaaaacttcaagatgtgaatctttgagaaccaaaag-agg 5116405  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaatgag 180  Q
    ||| |||| ||| ||||| | |||||||||| |||||||||||  | |||| |||||  |||||||||    
T  5116406 gggctcttgggagagggtcggtgccttttggagagagattcattggattggtaaacacttcaaatgag 5116473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 4512884 - 4512739
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||| ||||| ||||||||||||| | |  |||||||| ||| |||||||||||||| |||||||||||| | |    
T  4512884 caaaggagggaacttttagggt-tttagattctaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttagagaaccaaaag-agg 4512787  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggtt 161  Q
    ||| |||| ||||||||||| ||||||||||||| ||||||||| ||||    
T  4512786 gggctcttgggaaagggttggtgccttttgggga-agattcatggggtt 4512739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 34311212 - 34311057
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    ||||||| || |||||| |||||| ||||||||||| |||||||||| || | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  34311212 caaaggaaggaacttttagggtatgtagatactaaaggttgagggtccttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 34311114  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| ||||||||||||| || |||||| || |||||||||    
T  34311113 gggctcttgggaaaagggttggtgccttttgggga-aggttcatggggatggaaaaca 34311057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 2389955 - 2390109
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||  |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||| ||||||||||  |    
T  2389955 caaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggaaaaccaaaagaggg 2390053  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    || |  | || ||||||||| || |||||||||| ||||||||| ||||||||||||    
T  2390054 ggctattgcgaaaagggttggtggcttttgggga-agattcatggggttggaaaaca 2390109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 22269647 - 22269787
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| || ||| |||||| |||||||||||  |||||||||||| | |  |||||||| ||  |||||||||||||||||||||||||||  ||    
T  22269647 caaaggagggaacatttagggtatgtagatactaaagtttgagggtctttgggtgaggttcaaagctacaagatgtgaatcttggagaaccaaaag--ag 22269744  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatg 156  Q
    ||| |||| |||||| |||| ||||||||||||| |||||||||    
T  22269745 gggctcttgggaaagagttggtgccttttgggga-agattcatg 22269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 29608414 - 29608509
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||||||| ||||||||||||||||||||||||||||    
T  29608414 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaaga 29608509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 3258671 - 3258823
Alignment:
Q  16 aggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaagggg 115  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| | ||||||||||||||||||| ||||| | ||||    
T  3258671 aggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaacaaaaag-atgggg 3258769  T
Q  116 ttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
     |||| || ||||||||| ||||||||||||| ||||||||| || ||| |||||    
T  3258770 ctcttgggaaaagggttggtgccttttgggga-agattcatggggatgggaaaca 3258823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 32358331 - 32358199
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  32358331 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 32358234  T
Q  113 gggttctt-cggaaagggttgatgccttttgggga 146  Q
    ||| ||||  | ||||||||| |||||||||||||    
T  32358233 gggctcttgtgaaaagggttggtgccttttgggga 32358199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 22328884 - 22328753
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| |||||||||||||||||| ||||||| ||||| |    |||| ||| ||| ||||||| ||||||||||||||||||| | |||| |||| ||    
T  22328884 acttttagggtatttagatactaaaggttgaggatctttggtggaggttaaaagcttcaagatgtaaatcttggagaaccaaaag-agggggctcttagg 22328786  T
Q  124 -aaagggttgatgccttttggggagagattcat 155  Q
     |||| |||| ||||||||||||||||||||||    
T  22328785 aaaagagttggtgccttttggggagagattcat 22328753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 6360407 - 6360312
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||| | |||||| |||| |||||||| |||| ||||||||||||| | |  |||| |||  || ||||||||||||||||||||||||||||    
T  6360407 caaaggagagaacttttagggt-tttagatattaaaggttgagggtctttgggtgaggttaaaagtttcaagatgtgaatcttggagaaccaaaaga 6360312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 48599819 - 48599742
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaa 91  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||    
T  48599819 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaa 48599742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 2361466 - 2361312
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| || | |||||||||||||  |||||||||||| | |  | |||||  ||| ||||||||||||||| |||| |||||| | |    
T  2361466 caaaggagggaacttttaggat-tttagatactaaagattgagggtctttgggtgagattcaatccttcaagatgtgaatcttgaagaatcaaaag-agg 2361369  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| |||||||||||||  |||||||| |||||| |||||    
T  2361368 gggctcttgtgaaaagggttggtgccttttgggga-tgattcatggggttgggaaaca 2361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 4509192 - 4509047
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    ||||||| || |||||| |||| ||||||||||||| ||||||||| ||| | |  |||||||| ||| |||||||||        |||||||||||  |    
T  4509192 caaaggatggaacttttagggt-tttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtga--------gaaccaaaagag-g 4509103  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | | |||| ||||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  4509102 gagctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaaca 4509047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 4511034 - 4510889
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    ||||||| || |||||| |||| ||||||||||||| ||||||||| ||| | |  |||||||| ||| |||||||||        |||||||||||  |    
T  4511034 caaaggatggaacttttagggt-tttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtga--------gaaccaaaagag-g 4510945  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | | |||| ||||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  4510944 gagctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaaca 4510889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 37545336 - 37545308
Alignment:
Q  79 tttaagatgtgaatcttggagaaccaaaa 107  Q
    |||||||||||||||||||||||||||||    
T  37545336 tttaagatgtgaatcttggagaaccaaaa 37545308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 42262111 - 42261920
Alignment:
Q  7 gagaagcaaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaa 106  Q
    ||||| ||||||||||  ||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||||||||||||||    
T  42262111 gagaaccaaaggagggagcttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaa 42262012  T
Q  107 agaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa--tgagtctttatgagcaacttg 197  Q
    | || |||| |||| ||| ||||||| ||||||| || |||||||||||| | |||| ||||| ||||||   |||| |||||||||||||||    
T  42262011 a-aagggggctctttggagagggttggtgcctttaggtgagagattcatgggattgggaaacacatcaaaggagagtttttatgagcaacttg 42261920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 33647841 - 33647997
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| | |||||||||||||||| ||||| ||||||| | |  ||||||||  || |||||||||||||||||||| |||||| | |    
T  33647841 caaaggagagaacttttagagtatttagatactaaaggttgaaggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaatcaaaag-agg 33647939  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
     || |||| || ||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  33647940 aggctcttgggaaaagggttggtgccttttgaggagagattcacgaggttggaaaaca 33647997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 30218529 - 30218343
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||||||||||||||| | ||||||||||||| | |  |||||||||| | || |||||||||||||| ||||||||   ||    
T  30218529 caaaggagggaacttttagggtatttagatactatatgttgagggtctttgggtgaggttcaaaacatcaaaatgtgaatcttggacaaccaaaaatgag 30218430  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaatgag--tctttatgagcaacttga 198  Q
    || ||  | ||| || |||  ||||||||||||||||||||||| |||||| ||||| | |||| |||  ||||| ||||||||||||    
T  30218429 ggctt-atgggagagagttagtgccttttggggagagattcatggggttgggaaacacaccaaaggagaatctttgtgagcaacttga 30218343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 45726603 - 45726748
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||| ||||| |||||| |||| ||||||||||||| |||||| |||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  45726603 caaatgagggaacttttagggt-tttagatactaaaggttgagagtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 45726700  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggtt 161  Q
    | | |||| ||||||||||| ||||||||||||| ||||||||| ||||    
T  45726701 gagctcttgggaaagggttggtgccttttgggga-agattcatggggtt 45726748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 17450264 - 17450391
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| |||||||||||||   |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  17450264 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 17450361  T
Q  113 gggttcttcggaaagggttgatgccttttg 142  Q
    ||| |||| ||||||||||| |||| ||||    
T  17450362 gggctcttgggaaagggttggtgccctttg 17450391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 42288582 - 42288451
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgat 134  Q
    ||||||||||||| ||||||||||||| | |  |||||||||||| ||||||||||||||| ||||||||||| | |||| |||| || ||||||||| |    
T  42288582 tttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttgaagaaccaaaag-agggggctcttgggaaaagggttggt 42288484  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||||   ||||||||| |||||| |||||    
T  42288483 gccttttggg--aagattcatggggttgggaaaca 42288451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 1632227 - 1632073
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| |||||||||||||   |  |||||||| ||| |||||||||||||||| |||||||||| | |    
T  1632227 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggggaaccaaaag-agg 1632130  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| || |||||||||| ||||||||| |||||| |||||    
T  1632129 gggctcttgtgaaaagggttggtgtcttttgggga-agattcatggggttgggaaaca 1632073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 24397740 - 24397871
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| |||||||||||||||||| ||||| |||||||   |  |||||||| ||| || |||||||||||||||||||||||| | |||| |||| ||    
T  24397740 acttttagggtatttagatactaaaggttgacggtctttgtgtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaag-agggggctcttggg 24397838  T
Q  124 -aaagggttgatgccttttggggagagattcat 155  Q
     ||||||||| |||||||| |||||||| ||||    
T  24397839 aaaagggttggtgccttttagggagagactcat 24397871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 7450975 - 7451127
Alignment:
Q  14 aaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaagg 113  Q
    ||||||||| |||||| |||| ||||||||||||| |||| | |||||| | |  |||||||| ||| | ||||||||||||||||||||||||| | ||    
T  7450975 aaaggagggaacttttagggt-tttagatactaaaggttg-gcgtctttgggtgaggttcaaagcttcaggatgtgaatcttggagaaccaaaag-aggg 7451071  T
Q  114 ggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    || |||| || |||||||||||| ||||||| || ||||| ||| ||||||||||||    
T  7451072 ggctctttggtaaagggttgatgacttttggaga-agatttatggggttggaaaaca 7451127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 35447379 - 35447225
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttg-gagaaccaaaagaaa 111  Q
    |||||||| | |||||| |||| ||||||||||||| |||||| || |||   |  |||||||| ||| ||||||||| ||||| |||||||||||||      
T  35447379 caaaggagagaacttttagggt-tttagatactaaaggttgagagtatttgtgtgaggttcaaagcttcaagatgtgagtcttgagagaaccaaaaga-- 35447283  T
Q  112 ggggttcttcggaaa-gggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    |||| ||||  |||| |||||| |||||||| |||| ||||||||| |||||| |||||    
T  35447282 ggggctcttgtgaaaagggttggtgcctttt-gggaaagattcatggggttgggaaaca 35447225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 38811573 - 38811428
Alignment:
Q  14 aaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaagg 113  Q
    ||||||||| |||||| ||||| |||||||||||| ||||||||| ||| | |  |||||||| |||||||||||||||||||||||||| ||||  |||    
T  38811573 aaaggagggaacttttagggtacttagatactaaaggttgagggtatttgggtgaggttcaaagctttaagatgtgaatcttggagaacccaaag--agg 38811476  T
Q  114 ggttcttcggaaagggttgatgccttttggggagagattcatgaggtt 161  Q
    || |||| ||||||||||| || |||||| ||||||||||||||||||    
T  38811475 ggctcttgggaaagggttggtgtcttttgcggagagattcatgaggtt 38811428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 6655629 - 6655783
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||| | |    
T  6655629 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaactttaagatgtgaatcttggagaaccaaaag-agg 6655726  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  ||||||||||| |||||||||| || ||||||||| |||||| |||||    
T  6655727 gggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaaca 6655783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 27417446 - 27417292
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||||||||||||||||||||||||||||||| |||    
T  27417446 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagctttaagatgtgaatcttggagaaccaaaag-aag 27417349  T
Q  113 gggttcttcggaaa-gggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| ||||| |||||| || |||||||||| ||||||||| |||||| |||||    
T  27417348 gggctcttgggaaaggggttggtgtcttttgggga-agattcatggggttgggaaaca 27417292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 35370833 - 35370684
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| ||||||  ||||||||||||||||| ||||||||||||| |    |||||||| |||||||||||||||||||||||||| |||  | |    
T  35370833 caaaggagggaacttttaaggtatttagatactaaaggttgagggtctttgggagaggttcaaagctttaagatgtgaatcttggagaacctaaaagagg 35370734  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttg 162  Q
    |||||||| ||| ||||||| | |||||| |  |||||||||||||||||    
T  35370733 gggttcttgggagagggttggtcccttttcgaaagagattcatgaggttg 35370684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 8665080 - 8665234
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  8665080 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 8665177  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  8665178 gggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 8665234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 35369914 - 35369787
Alignment:
Q  34 tatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttga 133  Q
    ||||||||||||||| ||||||||||||| | |  ||||||||  ||||||||||||||||||||||||| |||  | ||||||||| ||| |||||||     
T  35369914 tatttagatactaaaggttgagggtctttgggtgaggttcaaagatttaagatgtgaatcttggagaacctaaaagagggggttcttgggagagggttgg 35369815  T
Q  134 tgccttttggggagagattcatgaggtt 161  Q
    | |||||| |  ||||||||||||||||    
T  35369814 tcccttttcgaaagagattcatgaggtt 35369787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 35662137 - 35662269
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgat 134  Q
    ||||||||||||| |||||| |||||| | |  |||||||| ||| || |||||||||||||||||||||||| | |||| |||| || ||||||||| |    
T  35662137 tttagatactaaaggttgagagtctttgggtgaggttcaaagcttcaatatgtgaatcttggagaaccaaaag-agggggctcttaggaaaagggttggt 35662235  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||||||||| ||||||||| ||||||||||||    
T  35662236 gccttttgggga-agattcatggggttggaaaaca 35662269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 55085861 - 55085706
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaacttt-aagatgtgaatcttggagaaccaaaagaaa 111  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||| ||| |||| ||||||| ||||||||||||||||||| |     
T  55085861 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttaaaagctttcaagatgtaaatcttggagaaccaaaag-ag 55085764  T
Q  112 ggggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    |||| ||||  ||||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  55085763 ggggctcttggggaaagggttggtgccttttgggga-agattcatggggttgggaaaca 55085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 12073066 - 12073219
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    ||||||| || |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||| |||||||||||||||||||  ||    
T  12073066 caaaggatggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaatcttggagaaccaaaag--ag 12073162  T
Q  113 gggttcttcgg--aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| ||  ||||||||| |||||||||||   ||||||||| ||||||||||||    
T  12073163 gggctcttgggaaaaagggttggtgccttttggg--aagattcatggggttggaaaaca 12073219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 40630679 - 40630811
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatg 135  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||  | | || |  | ||||||||| ||    
T  40630679 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggagcttttgtgaaaagggttggtg 40630778  T
Q  136 ccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||||| ||||||||| |||||| |||||    
T  40630779 ccttttgggga-agattcatggggttgggaaaca 40630811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 50263193 - 50263039
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| |||||| |||||| |||||| |||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  50263193 caaaggagggaacttttagggt-tttagacactaaaggttgagagtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 50263096  T
Q  113 gggttcttcg-gaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| |  ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  50263095 gggctcttggaaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 50263039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 54882693 - 54882847
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| || |||||||||||||||||||||||| | |    
T  54882693 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaag-agg 54882790  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| |||||||||| || ||||||||| |||||| |||||    
T  54882791 gggctcttatgaaaagggttggtgccttttggaga-agattcatggggttgggaaaca 54882847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 2209378 - 2209535
Alignment:
Q  10 aagcaaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||| ||||| |||||| |||| |||||||||||||  |||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||| |     
T  2209378 aagcaaatgagggaacttttagggt-tttagatactaaagattgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaacg- 2209475  T
Q  110 aaggggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | |||  |||| || ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  2209476 aggggactcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 2209535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 10071558 - 10071653
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| ||||||  ||| ||||||||||||| ||||||||||||| | |  |||||||| ||||||||||||||||||||||||||||||||    
T  10071558 caaaggagggaacttttaaggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagctttaagatgtgaatcttggagaaccaaaaga 10071653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 41964089 - 41964185
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| |||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| | ||||||||||||||||||||||||||    
T  41964089 caaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaaga 41964185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 46570041 - 46569884
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| | |||| |||| ||||||||||||| ||||| ||||||||| |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  46570041 caaaggagggaaattttagggt-tttagatactaaatgttgaaggtctttaggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 46569944  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaat 172  Q
    ||| ||||  | ||||| ||| |||||||| |||| ||||||||| |||||| ||||||||    
T  46569943 gggctcttgtgaaaaggattggtgcctttt-gggaaagattcatggggttgggaaacaaat 46569884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 33089585 - 33089726
Alignment:
Q  27 ttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaa 126  Q
    |||| |||||||||||||||||  |||||||||||| | |  ||||||||  || |||||||||||||||||||| |||||| | |||| |||| ||| |    
T  33089585 ttttaggtatttagatactaaagattgagggtctttgggtgaggttcaaagtttgaagatgtgaatcttggagaatcaaaag-agggggctcttgggaga 33089683  T
Q  127 gggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||| || ||||||| |||||||||||| ||| | ||||||    
T  33089684 gggttggtgtcttttggagagagattcatggggtcgaaaaaca 33089726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 33989546 - 33989689
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| ||||||||||||||||||  |||||||||||| | |  |||||||| ||| ||||||||||||||| ||||||||||  | |||| |||| ||    
T  33989546 acttttagggtatttagatactaaagtttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttgaagaaccaaaa-tagggggctcttggg 33989644  T
Q  124 aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | | ||||| |||||||| |||||||||||||| | |||| |||||    
T  33989645 agaaggttggtgcctttt-gggagagattcatgggattgggaaaca 33989689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 8653273 - 8653368
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||    
T  8653273 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaga 8653368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 46703174 - 46703315
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||| ||||| |||||| | |    
T  46703174 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttcgagaatcaaaag-agg 46703271  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatg 156  Q
    ||| |||| || ||||||||| ||||||||||||| |||||||||    
T  46703272 gggctcttgggaaaagggttggtgccttttgggga-agattcatg 46703315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 8647866 - 8647965
Alignment:
Q  69 ggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaa 167  Q
    |||||||| ||| ||||||||||||||||||||||||||| | |||| |||| || ||||||||| ||||||||||||| ||||||||| |||||| |||    
T  8647866 ggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaa 8647963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 26363942 - 26364092
Alignment:
Q  17 ggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggt 116  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||| | |  |||||||| ||| ||||||||||||||||||||||||||| | ||||     
T  26363942 ggagggaacttttagggt-tttagatactaaaggttgagggcctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggc 26364039  T
Q  117 tctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||  | |||||||||  ||||||||| || ||||||||| |||||| |||||    
T  26364040 tcttgtgaaaagggttggggccttttggaga-agattcatggggttgggaaaca 26364092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 50674341 - 50674246
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| |||||| |||| |||| |||||||| ||| ||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||    
T  50674341 caaaggagggaacttttagggt-tttaaatactaaatgttaagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaga 50674246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 22883248 - 22883082
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||| ||||| | |||| |||||||||||||||||| ||||||  | |||   |  |||||||| ||| ||||||||||||||||||||| ||||| | |    
T  22883248 caaatgagggaaattttagggtatttagatactaaaggttgagactatttgagtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaag-agg 22883150  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaatgag 180  Q
    ||| |||| ||| |||| |||| |||||||| |||||| ||||  |||| | ||||| ||||||||||    
T  22883149 gggctcttgggagagggctgataccttttggagagagactcatagggttaggaaacacatcaaatgag 22883082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 22934912 - 22934746
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||| ||||| | |||| |||||||||||||||||| ||||||  | |||   |  |||||||| ||| ||||||||||||||||||||| ||||| | |    
T  22934912 caaatgagggaaattttagggtatttagatactaaaggttgagactatttgagtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaag-agg 22934814  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaatgag 180  Q
    ||| |||| ||| |||| |||| |||||||| |||||| ||||  |||| | ||||| ||||||||||    
T  22934813 gggctcttgggagagggctgataccttttggagagagactcatagggttaggaaacacatcaaatgag 22934746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 10071966 - 10072039
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||| ||||||    
T  10071966 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaactaaaaga 10072039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 26699943 - 26699799
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||| ||||| |||| | ||| |||||||||||||| ||||| | ||||| | |  |||||||||||| |||||||||||||| |||| ||||| ||| |    
T  26699943 caaatgagggaacttgtagggcatttagatactaaaggttgaagatctttggttgaggttcaaaacttcaagatgtgaatcttagagagccaaatgaagg 26699844  T
Q  113 gggttcttcg-gaaagggttgatgccttttggggagagattcatg 156  Q
    ||| |||| |  ||||||||| ||||||||  | |||||||||||    
T  26699843 gggatcttggaaaaagggttggtgccttttcagaagagattcatg 26699799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 379051 - 379195
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| || | | ||||||||||| |||||||| |||| | |  |||||||| ||| | ||||||||||||||||||||||||| | |    
T  379051 caaaggagagaacttttaggatttgtagatactaaaggttgagggactttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaag-agg 379149  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgag 158  Q
    ||| ||||  | ||||||| | ||||||||||||| |||||||||||    
T  379150 gggctcttgtgaaaagggtcggtgccttttgggga-agattcatgag 379195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 3785790 - 3785899
Alignment:
Q  40 gatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgcctt 139  Q
    ||||||||| |||||| ||||||||    | |||||| ||| ||||||||||||||| ||||||||||| | |||| |||| | ||||||||| ||||||    
T  3785790 gatactaaaggttgagagtctttaggcgagattcaaagcttcaagatgtgaatcttgaagaaccaaaag-agggggctcttggaaaagggttggtgcctt 3785888  T
Q  140 ttggggagaga 150  Q
    ||| |||||||    
T  3785889 ttgaggagaga 3785899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 25723656 - 25723550
Alignment:
Q  69 ggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaac 168  Q
    |||||||| ||| || |||||||||||||||||||||||| | || | |||| |  || |||| ||||||||||| ||||| ||| || |||||| ||||    
T  25723656 ggttcaaagcttcaaaatgtgaatcttggagaaccaaaag-agggagctcttggataatggttaatgccttttggagagagcttcgtggggttgggaaac 25723558  T
Q  169 aaatcaaa 176  Q
    | ||||||    
T  25723557 acatcaaa 25723550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 34112357 - 34112439
Alignment:
Q  86 tgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||||||| |||| |||||  | || |||| | ||||||||| |||||||||||||||| |||| | ||||||||||||    
T  34112357 tgtgaatcttggataacctaaagac-gaggctcttagaaaagggttggtgccttttggggagaggttcacggggttggaaaaca 34112439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 32091270 - 32091326
Alignment:
Q  40 gatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttg 96  Q
    ||||||||| |||||||||||||   |  |||||||||||| |||||||||||||||    
T  32091270 gatactaaatgttgagggtctttgagtgaggttcaaaacttcaagatgtgaatcttg 32091326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 316462 - 316623
Alignment:
Q  37 ttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgc 136  Q
    |||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||||||||||||||||   |||| |||| ||| ||||||| |||    
T  316462 ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-ggggggctcttgggagagggttggtgc 316560  T
Q  137 cttttggggagagattcatgaggttggaaaacaaatcaaa--tgagtctttatgagcaacttg 197  Q
    ||||||||||||||||||| ||||||| ||||| ||||||   |||||||| |||||||||||    
T  316561 cttttggggagagattcataaggttgggaaacacatcaaaagagagtctttgtgagcaacttg 316623  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 28277989 - 28278143
Alignment:
Q  14 aaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaagg 113  Q
    ||||||||  |||||| |||| ||||||||||||| ||||||||||||| |||  |||||||| ||| ||||||||||||||||||||||||||||  ||    
T  28277989 aaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggg 28278087  T
Q  114 ggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    || |||| || ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  28278088 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 28278143  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 35615855 - 35615986
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| | |||||||||||||||| |||||||||||||   |  |||||||| ||| ||||||||||||||||||||||||||| | |||  |||| ||    
T  35615855 acttttagagtatttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-aggggactcttggg 35615953  T
Q  124 aaagggttgatgccttttggggagagattcatg 156  Q
    |||||| ||||||||||||||||||||||||||    
T  35615954 aaaggggtgatgccttttggggagagattcatg 35615986  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 16642372 - 16642227
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||||||||||||||||| ||||| ||||||| | |  |||||||| ||| |||| |||||||||| ||||||||||||       
T  16642372 caaaggagagcacttttagggtatttagatactaaaggttgatggtctttgggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga--- 16642276  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggtt 161  Q
    ||| |||| ||||||||||| ||||||||||||| ||||||||| ||||    
T  16642275 gggctcttgggaaagggttggtgccttttggggacagattcatggggtt 16642227  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 213141 - 213296
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatctt-ggagaaccaaaagaaa 111  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||| ||||||||||||| |     
T  213141 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttgggagaaccaaaag-ag 213238  T
Q  112 ggggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    |||| |||| || ||||||||| |||||||||| || ||||||||| |||||| |||||    
T  213239 ggggctcttgggaaaagggttggtgccttttggaga-agattcatggggttgggaaaca 213296  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 40146956 - 40147088
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgat 134  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |||| |||| || ||| ||||| |    
T  40146956 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaatggttggt 40147054  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||||||||| ||||||||| |||||| |||||    
T  40147055 gccttttgggga-agattcatggggttgggaaaca 40147088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 38746678 - 38746832
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  ||||||||  || ||||||||||||||||||||||||||| | |    
T  38746678 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaag-agg 38746775  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  38746776 gggctcttaagaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 38746832  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 5057721 - 5057874
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  || ||||| ||| |||||||||||||| |||||||||||||  |    
T  5057721 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggatcaaagcttcaagatgtgaatctttgagaaccaaaaga--g 5057817  T
Q  113 gggttcttcggaaag-ggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| | || |||||  ||||| ||||||||||||| ||||||||| ||||||||||||    
T  5057818 gggcttttgggaaaaaggttggtgccttttgggga-agattcatggggttggaaaaca 5057874  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 27015205 - 27015359
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  || ||||| ||| ||||||||||||||| ||||||||||| | |    
T  27015205 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggatcaaagcttcaagatgtgaatcttgaagaaccaaaag-agg 27015302  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| ||| ||||| |||||| |||||    
T  27015303 gggctcttgtgaaaagggttggtgccttttgggga-agaatcatggggttgggaaaca 27015359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 30802614 - 30802768
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||| ||||| |||||| ||||||||||||| |  | ||||||||||||||| |  |||||||| ||| | ||||| | |||| |||||||||||||  |    
T  30802614 caaatgagggaacttttagggtatttagatattctaggttgagggtctttaggtgaggttcaaagcttcatgatgtta-tcttagagaaccaaaagag-g 30802711  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
     || |||| ||||||||||  ||||||||||||||||||||||| |||| |||||||    
T  30802712 aggctcttgggaaagggtttgtgccttttggggagagattcatggggttagaaaaca 30802768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 10055144 - 10055047
Alignment:
Q  71 ttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||| ||| |||||||||||||||||||||||||||| | ||| |||| ||||||| ||| |||||| |||||||||||||| | |||||| |||||    
T  10055144 ttcaaagcttcaagatgtgaatcttggagaaccaaaagaga-gggctcttgggaaaggtttggtgccttatggggagagattcacggggttgggaaaca 10055047  T

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Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 33906452 - 33906362
Alignment:
Q  85 atgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa 176  Q
    |||||||||||| |||||||||| || |||| |||| ||| ||||||| ||||||||||||||||||||||| |||||  ||||| ||||||    
T  33906452 atgtgaatcttgtagaaccaaaa-aagggggctcttgggagagggttggtgccttttggggagagattcatggggttgagaaacacatcaaa 33906362  T

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Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 30792924 - 30793066
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| ||||| |||||||||||| ||||||||||||||| |   ||||||| ||| |||||||  ||||||||||||||||| |   || |  || ||    
T  30792924 acttttagggtaattagatactaaaggttgagggtctttaggtgatgttcaaagcttcaagatgt-tatcttggagaaccaaaatatgtggct--ttggg 30793020  T
Q  124 aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||| ||||||||||||||| ||||||| |||||| |||||    
T  30793021 aaaaggttggtgccttttggggagatattcatggggttgggaaaca 30793066  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 14689834 - 14689769
Alignment:
Q  82 aagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggaga 148  Q
    ||||||||||| ||||||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  14689834 aagatgtgaattttggagaaccaaaag-aaggggttcttgtgaaagggttggtgccttttggagaga 14689769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 21206076 - 21205993
Alignment:
Q  85 atgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||||| |||||||||||||  ||||||||| ||||||||||| || |||||  |||||| |||||  |||||| |||||    
T  21206076 atgtgaatcttagagaaccaaaagat-ggggttctttggaaagggttggtgtctttttcggagaggttcatagggttgggaaaca 21205993  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 27638109 - 27638015
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| ||||||  ||| ||||||||||||| ||||||  ||||| | |  ||||||||  || ||||||||||||||||||||||||||||    
T  27638109 caaaggagggaacttttaaggt-tttagatactaaaggttgagaatctttgggtgaggttcaaag-ttcaagatgtgaatcttggagaaccaaaaga 27638015  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 9109886 - 9109731
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| |||||| || |||||||| ||||||||| ||| | |  |||||||||||| |||||||||||||||||||||||||| || |||  || | ||    
T  9109886 acttttggggtatataaatactaaaggttgagggtatttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaa-aaggggactcatggg 9109788  T
Q  124 aaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaatgag 180  Q
    | |||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||    
T  9109787 agagggttgatgtcttttggggagagattcatgaggttgggagacacatcaaatgag 9109731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 7482726 - 7482571
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||  |||||| |||| ||||||||||||  ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||  |    
T  7482726 caaaggaggaaacttttagggt-tttagatactaacggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 7482628  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  7482627 gggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 7482571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 29135921 - 29136073
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| |||||||||||||   |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  29135921 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 29136018  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaa 167  Q
    ||  |||| || ||||||||| ||||||||||||| ||||||||| ||||||||||    
T  29136019 ggactcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaa 29136073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 28242061 - 28242215
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| || |||||||||||||||||||||||| | |    
T  28242061 caaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaag-agg 28242159  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| |||||||||||   |||||||| ||||||| |||||    
T  28242160 gggctcttgggaaaagggttggtgccttttggg--aagattcataaggttgggaaaca 28242215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 41135513 - 41135655
Alignment:
Q  33 gtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttg 132  Q
    |||||||||||||||| ||||||||||||| | |  |||||||| ||| |||||||| |||||||||||||||||| | |  | | || ||| |||||||    
T  41135513 gtatttagatactaaaggttgagggtctttgggtgaggttcaaaccttcaagatgtggatcttggagaaccaaaag-aggaagattttgggagagggttg 41135611  T
Q  133 atgccttttggggagagattcatgaggttggaaaacaaatcaaa 176  Q
     |||||||| |||||||||||||| |||||| ||||| ||||||    
T  41135612 gtgccttttagggagagattcatggggttgggaaacacatcaaa 41135655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 37167992 - 37168124
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgat 134  Q
    ||||||||||||| ||||||||| ||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |||| |||| || ||||||||| |    
T  37167992 tttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaagggttggt 37168090  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||||||||| ||||||||| |||||| |||||    
T  37168091 gccttttgggga-agattcatggggttgggaaaca 37168124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 34603249 - 34603403
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| |||||||| |||| ||||| ||||||| | |   ||||||| ||| ||||||||||||||||||||||||||| | |    
T  34603249 caaaggagggaacttttagggt-tttagatattaaaggttgaaggtctttgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 34603346  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | | |||| || ||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  34603347 gagctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaaca 34603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 37033540 - 37033414
Alignment:
Q  42 tactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgatgccttt 140  Q
    ||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |||| |||| || ||||||||| |||||||    
T  37033540 tactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaagggttggtgccttt 37033442  T
Q  141 tggggagagattcatgaggttggaaaaca 169  Q
    || ||| |||||||||||||||| |||||    
T  37033441 tgagga-agattcatgaggttgggaaaca 37033414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 47255829 - 47255734
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||    
T  47255829 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaga 47255734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 42298448 - 42298316
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttctt-cggaaagggttgat 134  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |||| ||||  | ||||||||| |    
T  42298448 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgtgaaaagggttggt 42298350  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||| || ||||||||| |||||| |||||    
T  42298349 gccttttggaga-agattcatggggttgggaaaca 42298316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 11348371 - 11348525
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    ||||||| || |||||| |||| ||||||||||||  ||||||||||||| | |  ||||||||  || ||||||||||||||||||||||||||| | |    
T  11348371 caaaggatggaacttttagggt-tttagatactaagggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaag-agg 11348468  T
Q  113 gggttcttcggaaagggt-tgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| ||||| ||| || |||||||||| || ||||||||| ||||||||||||    
T  11348469 gggctcttgggaaaaggtctggtgccttttggaga-agattcatggggttggaaaaca 11348525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 34602834 - 34602680
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| |||||||| |||| ||||| ||||||| | |   ||||||| ||| ||||||||||||||||||||||||||| | |    
T  34602834 caaaggagggaacttttagggt-tttagatattaaaggttgaaggtctttgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 34602737  T
Q  113 gggttcttcg-gaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    | | |||| |  ||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  34602736 gagctcttggtaaaagggttggtgccttttgggga-agattcatggggttggaaaaca 34602680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 6808142 - 6808216
Alignment:
Q  36 tttagatactaaacgttgaggg-tctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||||||||| |||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||||||||    
T  6808142 tttagatactaaaggttgaggggtctttaggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaaga 6808216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 28318186 - 28318112
Alignment:
Q  82 aagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatg 156  Q
    ||||||||||| ||||| |||||||||| |||||||||| ||||||||||  ||| |||||||||||||||||||    
T  28318186 aagatgtgaattttggataaccaaaagagaggggttcttgggaaagggttagtgcattttggggagagattcatg 28318112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 13547562 - 13547489
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||| ||||||||||    
T  13547562 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggataaccaaaaga 13547489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 13549473 - 13549400
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||| ||||||||||    
T  13549473 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggataaccaaaaga 13549400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 193307 - 193438
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttctt-cggaaagggttgat 134  Q
    |||||||| |||| ||||||||||||| | |  |||||||| ||| | ||||||||||||||||||||||||| | |||| ||||  ||||| ||||| |    
T  193307 tttagatattaaaggttgagggtctttcggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaag-agggggctcttggggaaaaggttggt 193405  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||||   ||||||||| |||||| |||||    
T  193406 gccttttggg--aagattcatggggttgggaaaca 193438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 37879384 - 37879252
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttctt-cggaaagggttgat 134  Q
    ||||||||||||| ||||||| ||||| | |  |||||||| ||| ||||||||||||||||||||| ||||| | |||| ||||  | ||| ||||| |    
T  37879384 tttagatactaaatgttgaggatctttgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaag-agggggctcttgtgaaaaaggttggt 37879286  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||||||||| | ||||||| |||||| |||||    
T  37879285 gccttttgggga-aaattcatggggttgggaaaca 37879252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 31928281 - 31928208
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||||||||| |||||| |||||| |||  |||||||| ||| |||||||||||||| || ||||||||||    
T  31928281 tttagatactaaaggttgagagtctttggatgaggttcaaagcttcaagatgtgaatcttagaaaaccaaaaga 31928208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 47114867 - 47114998
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaa-agggttgat 134  Q
    |||||||| ||||  |||||||||||| | |  |||||||| ||| ||| ||||||||||||||||||||||| | |||| |||| |||| ||||||| |    
T  47114867 tttagatattaaagattgagggtctttgggtgaggttcaaagcttcaagctgtgaatcttggagaaccaaaag-agggggctcttgggaacagggttggt 47114965  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
     |||||||||   ||||||||| |||||| |||||    
T  47114966 accttttggg--aagattcatggggttgggaaaca 47114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 19752381 - 19752498
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatg 135  Q
    ||||||||||||| ||||| ||||||| | |  ||||| || | | |  |||||||||||||||||||||||| | |||| ||||  |||| ||||| ||    
T  19752381 tttagatactaaaggttgaaggtctttgggtgaggttctaagcgtcataatgtgaatcttggagaaccaaaag-atggggctcttatgaaaaggttggtg 19752479  T
Q  136 ccttttggggagagattcat 155  Q
    ||||||||||| ||||||||    
T  19752480 ccttttgggga-agattcat 19752498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 10157379 - 10157433
Alignment:
Q  102 ccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatg 156  Q
    ||||||||||| | || || ||||| |||||||| ||||||||||||||||||||    
T  10157379 ccaaaagaaagagattattgggaaatggttgatgacttttggggagagattcatg 10157433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 3331285 - 3331357
Alignment:
Q  82 aagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcat 155  Q
    |||||||||||||| |||||||||||| | |||| |||| ||||||||||  || | ||| |||||||||||||    
T  3331285 aagatgtgaatcttagagaaccaaaag-agggggctcttgggaaagggttcgtgtcgttttgggagagattcat 3331357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 19754164 - 19754318
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| | ||||||||||| ||| ||||||||| | |  |||||||| |   | ||| ||||||||||| |||||| || | |    
T  19754164 caaaggagggaacttttagggt-tctagatactaaaggttaagggtctttgggtgaggttcaaagcaccatgatttgaatcttggaaaaccaagag-agg 19754261  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  19754262 gggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 19754318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 7001 - 7155
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  7001 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 7098  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  7099 gggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttggaaaaca 7155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 11231 - 11385
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  11231 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-atg 11328  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  ||||||||||| |||||||||| || ||||||||| |||||| |||||    
T  11329 gggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaaca 11385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 3000016 - 2999874
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||| | |||||| ||| |||||||||||||| ||||||||||||| | |   ||||||| ||| ||||||||||||||||||||||||||| | |    
T  3000016 caaaggagagaacttttagggaatttagatactaaaggttgagggtctttgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 2999918  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatg 156  Q
    |||||||| ||| | ||||| || |||||||||| |||||||||    
T  2999917 gggttcttgggatatggttggtgtcttttggggaaagattcatg 2999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 11383659 - 11383807
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||  |    
T  11383659 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 11383757  T
Q  113 gggttcttcggaaagggttgatgccttttggggagagattcatgaggttgg 163  Q
    || |  |  | ||||||||| ||||||||| ||| ||||||||| ||||||    
T  11383758 ggctattgtgaaaagggttggtgccttttgagga-agattcatggggttgg 11383807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 42435486 - 42435332
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||  |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  42435486 caaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 42435389  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||| ||||| || |||||||||| ||||||||| |||||| |||||    
T  42435388 gggctcttgggaaaaaggttggtgacttttgggga-agattcatggggttgggaaaca 42435332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 40585408 - 40585560
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| | |||||||||||||||| ||| || |||||| | |  |||||||| ||| ||||||||||| || ||||| |||||||  ||| |  || ||    
T  40585408 acttttagagtatttagatactaaaggttaagagtctttggttgaggttcaaagcttcaagatgtgaatatttgagaatcaaaagagtgggctcttttgg 40585507  T
Q  124 aaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa 176  Q
    | |||||||||| ||||||| |||||||||||| |||| ||||||| ||||||    
T  40585508 agagggttgatgtcttttggtgagagattcatggggtttgaaaacacatcaaa 40585560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 22976229 - 22976354
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcg-gaaagggttgat 134  Q
    ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | | || |||| |  ||||||||| |    
T  22976229 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-aggaggctcttggaaaaagggttggt 22976327  T
Q  135 gccttttggggagagattcatgaggttg 162  Q
    |||||||||||| ||||||||| |||||    
T  22976328 gccttttgggga-agattcatggggttg 22976354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 4283219 - 4283314
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| |||||||| |||||||||||||||||||    
T  4283219 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtggatcttggagaaccaaaaga 4283314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 44353468 - 44353619
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||| ||||||| ||||   |||||||||||||| ||||| | |    
T  44353468 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggtttaaaacttcaaga---gaatcttggagaactaaaag-agg 44353562  T
Q  113 gggttcttcggaa-agggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  ||| ||||||| |||||||||| || ||||||||| ||||||||||||    
T  44353563 gggctcttgtgaagagggttggtgccttttggaga-agattcatggggttggaaaaca 44353619  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 40328476 - 40328606
Alignment:
Q  38 tagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg-aaagggttgatgc 136  Q
    |||||||||||  || ||||||||| | |  |||||||| ||| | ||||||||||||||||||||||||| | ||||||||| || ||||||||| |||    
T  40328476 tagatactaaagatttagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaag-agggggttcttgggaaaagggttggtgc 40328574  T
Q  137 cttttggggagagattcatgaggttggaaaaca 169  Q
    ||||| |||| ||||||||| || ||| |||||    
T  40328575 cttttaggga-agattcatggggatgggaaaca 40328606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 20686552 - 20686452
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||  ||||| |||||||||||| ||||||| ||||| | |   ||||||| ||| ||||||||||||||||| |||||||||| ||    
T  20686552 caaaggagggaactttcagggtacttagatactaaatgttgaggatctttgg-tgaagttcaaagcttcaagatgtgaatcttggataaccaaaagagag 20686454  T
Q  113 gg 114  Q
    ||    
T  20686453 gg 20686452  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 40221444 - 40221572
Alignment:
Q  40 gatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaaa-gggttgatgcct 138  Q
    ||||||||| || || ||||||| |||  |||| | ||||| |||||||||||||| |||||||||||  | |||| |||| ||||| |||||  |||||    
T  40221444 gatactaaaggtggaaggtctttggatgaggtttagaacttcaagatgtgaatcttcgagaaccaaaa-tagggggctcttgggaaaggggttagtgcct 40221542  T
Q  139 tttggggagagattcatgaggttggaaaaca 169  Q
    |||||||| ||||||||| |||||| |||||    
T  40221543 tttgggga-agattcatggggttgggaaaca 40221572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 40535538 - 40535652
Alignment:
Q  26 tttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcggaa 125  Q
    |||| ||||||||||||||||||  |||| ||||||| | |  ||||||||  || ||| |||| |||||  ||||||||||||  |||||||||  |||    
T  40535538 ttttagggtatttagatactaaagattgatggtctttgggt--ggttcaaagtttcaagttgtggatcttttagaaccaaaagag-ggggttcttgagaa 40535634  T
Q  126 agggttgatgccttttgg 143  Q
    ||||||||||||||||||    
T  40535635 agggttgatgccttttgg 40535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 3846241 - 3846159
Alignment:
Q  85 atgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    |||||||||||| |||||||||||||  | | |||| | |||| |||| || |||||||||||||||||||| |||||| |||||    
T  3846241 atgtgaatcttgaagaaccaaaagaa--gagctcttggaaaagagttggtgtcttttggggagagattcatggggttgggaaaca 3846159  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 10101583 - 10101512
Alignment:
Q  85 atgtgaatcttggagaaccaaaagaaaggggttcttcggaaagggttgatgccttttggggagagattcatga 157  Q
    ||||||| |||||||||||||||||  | || |||| ||||||||||| ||| ||||||| ||||||||||||    
T  10101583 atgtgaaccttggagaaccaaaagag-gaggctcttgggaaagggttgctgcattttgggaagagattcatga 10101512  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 3817761 - 3817675
Alignment:
Q  82 aagatgtgaatcttggagaaccaaaagaa-aggggttcttcggaaagggttgatgccttttggggagagattcatgaggttggaaaa 167  Q
    |||||| || ||||| |||||||||||||   ||| |||| | ||||||||| |||||||||| || ||||||||| ||||||||||    
T  3817761 aagatgggattcttgaagaaccaaaagaattagggctcttggaaaagggttggtgccttttggagaaagattcatggggttggaaaa 3817675  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 21593361 - 21593493
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttctt-cggaaagggttgat 134  Q
    ||||||||||||| ||||||||||||| | |  ||||||||  |||||||||||||||||||||||||||||| | |||| ||||  ||||||||||| |    
T  21593361 tttagatactaaatgttgagggtctttgggtgaggttcaaagatttaagatgtgaatcttggagaaccaaaag-agggggctcttggggaaagggttggt 21593459  T
Q  135 gccttttggggagagattcatgaggttggaaaaca 169  Q
    ||||||||| || ||||||||| ||||||||||||    
T  21593460 gccttttggaga-agattcatggggttggaaaaca 21593493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 3809204 - 3809049
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||||| ||||||||||||| | |  |||||||| ||| ||||||||||||||||||||||||||||  |    
T  3809204 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 3809106  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| | |||||||| || ||||||||| |||||| |||||    
T  3809105 gggctcttgtgaaaagggttggttccttttggaga-agattcatggggttgggaaaca 3809049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 603550 - 603421
Alignment:
Q  39 agatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttctt-cggaaagggttgatgcc 137  Q
    ||||| |||| ||||||||||||| |||  |||||||| ||| ||||||||||||||||||||||||||| | |||| ||||  ||||||||||| ||||    
T  603550 agatagtaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgaggaaagggttggtgcc 603452  T
Q  138 ttttggggagagattcatgaggttggaaaaca 169  Q
    |||||| || ||||||||| |||||| |||||    
T  603451 ttttggaga-agattcatggggttgggaaaca 603421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 5043301 - 5043454
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| |||||||||||||  |||||||||||| | |  |||||||| ||| |||||| ||||||||||||||||||||| |     
T  5043301 caaaggagggaacttttagggt-tttagatactaaagattgagggtctttgggtgaggttcaaagcttcaagatgagaatcttggagaaccaaaagaga- 5043398  T
Q  113 gggttcttcgg-aaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| |||| || ||||||||| |||||||||||   ||||||||| |||||| |||||    
T  5043399 gggctcttgggaaaagggttggtgccttttggg--aagattcatggggttgggaaaca 5043454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 2973435 - 2973280
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| | ||||||||||| ||||| ||||||| | |  |||||||| ||| ||||||||||||||||||||||||||| | |    
T  2973435 caaaggagggaacttttagggtttgtagatactaaaggttgaaggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaag-agg 2973337  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||| |||| |||| ||||||||| |||||| |||||    
T  2973336 gggctcttgtgaaaagggttggtgcttttttggga-agattcatggggttgggaaaca 2973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 22425300 - 22425173
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaagggg-ttcttcgga-aagggttga 133  Q
    ||||||||||||| ||||||||||||| | | ||||||| | ||| ||||||||||||||||||||||||||||  ||||  |||| ||| ||||||||     
T  22425300 tttagatactaaaggttgagggtctttgggtgtggttcagagcttcaagatgtgaatcttggagaaccaaaagaggggggcctcttgggataagggttgg 22425201  T
Q  134 tgccttttggggagagattcatgaggttg 162  Q
    ||| ||||||||| ||||||||| |||||    
T  22425200 tgcattttgggga-agattcatggggttg 22425173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 25072869 - 25073019
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| |||||||||||||||||| ||||||||||||| | |  |||||||| ||| |||||||||||||| ||||||| ||||   |||| |||| |     
T  25072869 acttttagggtatttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctttgagaacccaaag--gggggctcttgga 25072966  T
Q  124 aaagggttgatgccttttggggagagattcatgaggttggaaaacaaatcaaa 176  Q
    |||||| |  ||||| ||||| ||||||||||  |||| | ||||| ||||||    
T  25072967 aaagggattgtgcctcttgggaagagattcatagggtttggaaacacatcaaa 25073019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 26800454 - 26800585
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttcttcgg 123  Q
    |||||| |||||| ||||||||||| ||||||||||||| | |  |||||||| ||| |||||||| ||| |||| ||||||||| | |||| |||| ||    
T  26800454 acttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtggatcatggataaccaaaag-agggggctcttggg 26800552  T
Q  124 -aaagggttgatgccttttggggagagattcatg 156  Q
     ||| ||||| ||||||||||||| |||||||||    
T  26800553 aaaaaggttggtgccttttgggga-agattcatg 26800585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 26830619 - 26830524
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||||||| |||||| |||| |||||||| |||| | |||||||||||   |  |||| ||||||| ||||||||||||||||||||||||||||    
T  26830619 caaaggagggaacttttagggt-tttagataataaaggctgagggtctttgagtaaggtttaaaacttcaagatgtgaatcttggagaaccaaaaga 26830524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 17762661 - 17762755
Alignment:
Q  14 aaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    ||||||| | |||||| |||| ||||||||||||| ||||||| ||||| | |   ||||||  ||| ||||||||||||||||||||||||||||    
T  17762661 aaaggagagaacttttagggt-tttagatactaaaggttgaggatctttgggtgaagttcaaggcttcaagatgtgaatcttggagaaccaaaaga 17762755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 80778 - 80624
Alignment:
Q  13 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaag 112  Q
    |||||||||| |||||| |||| ||||||||||| | ||||||||||||| | |  |||||||| ||| ||||| ||||||||||||||||||||| | |    
T  80778 caaaggagggaacttttagggt-tttagatactagaggttgagggtctttgggtgaggttcaaagcttcaagatttgaatcttggagaaccaaaag-agg 80681  T
Q  113 gggttctt-cggaaagggttgatgccttttggggagagattcatgaggttggaaaaca 169  Q
    ||| ||||  | ||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  80680 gggctcttatgaaaagggttggtgccttttgggga-agattcatggggttgggaaaca 80624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 18474 - 18348
Alignment:
Q  36 tttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaagaaaggggttctt-cggaaagggttgat 134  Q
    ||||||||||||| |||| |||||||| | |  |||||||| ||| ||||||||||||||||||||| ||||| | |||| ||||  | ||||||||| |    
T  18474 tttagatactaaaggttgcgggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaag-agggggctcttgtgaaaagggttggt 18376  T
Q  135 gccttttggggagagattcatgaggttg 162  Q
    |||||||||||  |||||||||||||||    
T  18375 gccttttgggggaagattcatgaggttg 18348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 1890 - 1805
Alignment:
Q  24 actttttgggtatttagatactaaacgttgagggtctttagatttggttcaaaactttaagatgtgaatcttggagaaccaaaaga 109  Q
    |||||| |||||||||||||||||| ||||| ||||||| | |  | | |||| ||| ||||||||||||||| ||||||||||||    
T  1890 acttttagggtatttagatactaaaggttgaaggtctttgggtgagctccaaagcttcaagatgtgaatcttgaagaaccaaaaga 1805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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