View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_high_6 (Length: 486)
Name: NF15930_high_6
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Original strand, 4951397 - 4951868
Alignment:
| Q |
16 |
caactagagatattacacacatgtgcgaagactaatatattgaagtaaatgtatattcgttcaagaagttgattcgatcagaaacgaactctaaactatg |
115 |
Q |
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| T |
4951397 |
caactagagatattacacacacgtgcgaagactaatatattgaagtaaatgtatatttgttcaagaagttgattcgatcagaaacgaactctaaactatg |
4951496 |
T |
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| Q |
116 |
cgattaagaggataagtattgatcacnnnnnnn-----ctctttcaaaaatcacttat----------gatggtgatcggctctttttaatttaaagaag |
200 |
Q |
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| T |
4951497 |
cgattaagaggataagtattgatcacttttttttttctctctttcaaaaatcacttatgttacattatgatggtgatcggctctttttaatttaaagaag |
4951596 |
T |
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| Q |
201 |
aaacaacacttgtaccaagcaatcagtttgccaacaaggaagttatgaattttttacagaaggaaagttattattaattaatcaactttgatgtatgtca |
300 |
Q |
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| T |
4951597 |
aaacaacacttgtaccaagcaatcagtttgccaacaaggaagttatgaattttttacagaaggaaag---ttattaattaatcaactttggtgtatgtca |
4951693 |
T |
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| Q |
301 |
ttagagccgggatgagatgacggatcatatgggtccatgtgatttaaatttgatagttgaaaac----taattaatttacgaaacatcttggacccacca |
396 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
4951694 |
ttagagccgg-----gatgacggatcatatgggtccatgtgatttaaatttgatagttgcaaactaattaattaatttacgaaacagcttggacccacca |
4951788 |
T |
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| Q |
397 |
tggattttgtgatctccttgctaatctggtaatcgttttaaaatagtgtacatcaatttcttctagagctgtggtctgtg |
476 |
Q |
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| T |
4951789 |
tagattttgtgatctccttgctaatctggtaatcgttttaaaatagtgtacatcaatttcttctagagctgtggtctgtg |
4951868 |
T |
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