View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_high_8 (Length: 472)
Name: NF15930_high_8
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 27801399 - 27801035
Alignment:
| Q |
11 |
gagatgaagaaactataagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacagaaagc |
110 |
Q |
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| T |
27801399 |
gagatgaagaaactataagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacagaaagc |
27801300 |
T |
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| Q |
111 |
nnnnnnnnnnnnnnnntgaagatctaatcaactaaagtttgtgacaaaccaacctcatgagggttcacaatgtgcttatatctaccggccaaaagaatgg |
210 |
Q |
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| T |
27801299 |
aaaacaaaaataaaaatgaagatctgatcaactaaagcttgtgacaaaccaacctcatgagggttcacaatgtgcttatatctaccggccaaaagaatgg |
27801200 |
T |
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| Q |
211 |
aaagtgttgtaggcacgaaagtgtaggatgctccaatta-cagagggtaatcgagttccaaaggtggtttggagaaccttgtcaattccctccccaagta |
309 |
Q |
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| T |
27801199 |
aaagtgttgtaggcacgaaagtgtaggatgctccaattaacagagggtaatcgagttccaaaggtggtttggagaaccttgtcaattccctccccaagta |
27801100 |
T |
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| Q |
310 |
attttgatattctgctttcacttagtgtttccaattcctcagtcatttaatgcgctatcaatcaa |
374 |
Q |
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| T |
27801099 |
attttgatattctgctttcacttagtgtttccaattcctcagtcatttaatgcgctatcaatcaa |
27801035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 472
Target Start/End: Complemental strand, 27764060 - 27763935
Alignment:
| Q |
349 |
cagtcatttaatgcgctatcaatcaaagaaattgtcatgttaaaaaagaacagcac-aatacatgccccaactccagatcacaaattttgaacgttt-ag |
446 |
Q |
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| T |
27764060 |
cagtcatttaacgtgctatcaatcaaagcaatgatgatgttaaaataaaacagtacaaatacatgccctagctccagatcatgaattttgaatgtttcag |
27763961 |
T |
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| Q |
447 |
aaagatgaagagcagattcaacggac |
472 |
Q |
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| T |
27763960 |
aaaaatgaaggacagaatcaacggac |
27763935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 26474868 - 26475135
Alignment:
| Q |
15 |
tgaagaaactataagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacagaaagcnnnn |
114 |
Q |
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| T |
26474868 |
tgaagcaactataagggcaccctgtgttcccctcattatcttctcaaatttctgcatatttgtcaattagacaacaatgattacataatagaaaacaaaa |
26474967 |
T |
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| Q |
115 |
nnnnnnnnnnnntgaagatctaatcaactaaagtttgtgacaaaccaacctcatgagggttcacaatgtgcttatatctaccggccaaaagaatggaaag |
214 |
Q |
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| T |
26474968 |
caaaaataaaaatgaagatataatcaacttaaatttgcgagaaaccaacctcatgaggattcacaatgtcactatatctaccagccaaaataattgaaat |
26475067 |
T |
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| Q |
215 |
tgttgtaggcacgaaagtgtaggatgctccaattacagagggtaatcgagttccaaaggtggtttgga |
282 |
Q |
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| T |
26475068 |
agttgttggcacaaaagtgtaggatcctccaataaccgcaggtagacgagttccaaatgttgtttgga |
26475135 |
T |
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