View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_1 (Length: 699)
Name: NF15930_low_1
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 372 - 485
Target Start/End: Complemental strand, 24704502 - 24704391
Alignment:
| Q |
372 |
tctcggtctaaactttgaatttggataacaagaaataaaataagagggaaaagaaactatacggtctactttggcatgtattccgcagaaactggatatt |
471 |
Q |
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| T |
24704502 |
tctcggtctaaactttgaatttggataacaagaaataaaataagagggaaaagaaac--tacggtctattttagcatgtattccgcataaactggatatt |
24704405 |
T |
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| Q |
472 |
ctgccaacacttat |
485 |
Q |
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| T |
24704404 |
ctgccaacacttat |
24704391 |
T |
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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 533 - 681
Target Start/End: Complemental strand, 24704344 - 24704189
Alignment:
| Q |
533 |
taaggccacattttattttgaatattttatccttgtctgatggaaagaacattt-attctgattacagttcaannnnnnngaatcctatctttttgaact |
631 |
Q |
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||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
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| T |
24704344 |
taaggccacatattattttgaatattttatccttatttgatggaaagaacatttaattctgatgacagttcaatttttttgaatcctatctttttgaact |
24704245 |
T |
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| Q |
632 |
actattta---tactctaagatcaccccttat---gtatatttgaatccccctaaa |
681 |
Q |
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|||||||| |||||||||||| |||| ||| ||||||||||||||||||||| |
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| T |
24704244 |
actatttatcctactctaagatccccccatatagagtatatttgaatccccctaaa |
24704189 |
T |
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