View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15930_low_10 (Length: 471)

Name: NF15930_low_10
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15930_low_10
NF15930_low_10
[»] chr2 (4 HSPs)
chr2 (248-461)||(4300774-4300987)
chr2 (129-220)||(4300695-4300786)
chr2 (16-104)||(4300575-4300663)
chr2 (16-97)||(7895351-7895432)
[»] chr6 (1 HSPs)
chr6 (398-442)||(7467116-7467160)
[»] chr5 (1 HSPs)
chr5 (18-107)||(41908957-41909046)
[»] chr7 (2 HSPs)
chr7 (24-97)||(14585114-14585186)
chr7 (54-107)||(33998685-33998738)
[»] chr4 (1 HSPs)
chr4 (67-108)||(7532382-7532423)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 248 - 461
Target Start/End: Original strand, 4300774 - 4300987
Alignment:
Q  248 cagctatgaattattgaatatgatagaaactcgtacgatttgtgttatttaggagtttaagtctcgttatccaattcgtgttagtgcaagcaagatacca 347  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300774 cagctatcaattattgaatatgatagaaactcgtacgatttgtgttatttaggagtttaagtctcgttatccaattcgtgttagtgcaagcaagatacca 4300873  T
Q  348 ccaaactaacttgtgacgtaagtaattaaccatttgcatggtatttgcatattagatccacttgctatgttcttatcatttaccattacaactcaaatac 447  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300874 ccaaactaacttgtgccgtaagtaattaaccatttgcatggtatttgcatattagatccacttgctatgttcttatcatttaccattacaactcaaatac 4300973  T
Q  448 aaacctttgcttct 461  Q
    ||||||||||||||    
T  4300974 aaacctttgcttct 4300987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 4300695 - 4300786
Alignment:
Q  129 gttttgtgatgacgaaaaacatctcattttatttatcagggagtttaagtcatactatttgtgttattttggaatataacagctatcaatta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300695 gttttgtgatgacgaaaaacatctcattttatttatcagggagtttaagtcatactatttgtgttattttggaatataacagctatcaatta 4300786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 4300575 - 4300663
Alignment:
Q  16 ggttgaagataataaattggcataacataaacatatgctgaacataaaaaagtcataattttgatattaatatcaacataaagtgatca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  4300575 ggttgaagataataaattggcataacataaacatatgctgaacataaaaaagtcataattttgatattaatataaacataaattgatca 4300663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 7895351 - 7895432
Alignment:
Q  16 ggttgaagataataaattggcataacataaacatatgctgaacataaaaaagtcataattttgatattaatatcaacataaa 97  Q
    ||||||||| ||||||| |  |||| || |||| ||  ||||||||||| ||||| |||||||| |||||||| ||||||||    
T  7895351 ggttgaagacaataaatcgatataatatgaacacatcttgaacataaaagagtcaaaattttgacattaatataaacataaa 7895432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 7467116 - 7467160
Alignment:
Q  398 attagatccacttgctatgttcttatcatttaccattacaactca 442  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||    
T  7467116 attagatccacttgctatggtcttatcatttaccattagaactca 7467160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 41908957 - 41909046
Alignment:
Q  18 ttgaagataataaattggcataacataaacatatgctgaacataaaaaagtcataattttgatattaatatcaacataaagtgatcatta 107  Q
    ||||| |||||||||   |||| ||| |||||||  |||||||||||  |||||||| |||||||||| || |||||||| |||||||||    
T  41908957 ttgaacataataaatgaacataccatgaacatatcttgaacataaaattgtcataatcttgatattaacatgaacataaattgatcatta 41909046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 14585114 - 14585186
Alignment:
Q  24 ataataaattggcataacataaacatatgctgaacataaaaaagtcataattttgatattaatatcaacataaa 97  Q
    ||||||||||| |||||||| |||| ||  ||||||| ||||||||||| |||||| |||||||| || |||||    
T  14585114 ataataaattgacataacatgaacacatattgaacat-aaaaagtcatatttttgacattaatatgaatataaa 14585186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 33998738 - 33998685
Alignment:
Q  54 tgaacataaaaaagtcataattttgatattaatatcaacataaagtgatcatta 107  Q
    ||||||||||||||| ||||| |||| ||| |||| |||||||||||| |||||    
T  33998738 tgaacataaaaaagttataatcttgacattcatatgaacataaagtgaccatta 33998685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 7532382 - 7532423
Alignment:
Q  67 gtcataattttgatattaatatcaacataaagtgatcattag 108  Q
    |||||||| ||||||||||||| |||||||| ||||||||||    
T  7532382 gtcataatcttgatattaatatgaacataaattgatcattag 7532423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University