View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15930_low_11 (Length: 466)

Name: NF15930_low_11
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15930_low_11
NF15930_low_11
[»] chr5 (12 HSPs)
chr5 (13-450)||(41286351-41286791)
chr5 (22-181)||(41316351-41316510)
chr5 (22-191)||(31188371-31188540)
chr5 (25-177)||(41328321-41328473)
chr5 (22-180)||(41310611-41310769)
chr5 (22-180)||(41324420-41324578)
chr5 (23-177)||(41332332-41332486)
chr5 (22-127)||(31225273-31225378)
chr5 (66-174)||(41337304-41337412)
chr5 (22-115)||(31178402-31178495)
chr5 (22-180)||(41366511-41366666)
chr5 (196-263)||(4209918-4209986)
[»] chr4 (1 HSPs)
chr4 (68-180)||(17249070-17249182)
[»] chr6 (3 HSPs)
chr6 (245-391)||(2401881-2402029)
chr6 (198-263)||(2401804-2401870)
chr6 (200-263)||(17545311-17545375)
[»] chr7 (3 HSPs)
chr7 (296-377)||(42424446-42424528)
chr7 (343-390)||(42424192-42424239)
chr7 (203-263)||(42424577-42424638)
[»] chr1 (1 HSPs)
chr1 (291-370)||(43473281-43473360)
[»] chr8 (2 HSPs)
chr8 (245-370)||(5021746-5021862)
chr8 (197-269)||(35213373-35213446)
[»] chr3 (3 HSPs)
chr3 (276-385)||(8895911-8896019)
chr3 (196-267)||(31311326-31311398)
chr3 (201-261)||(55378742-55378803)
[»] chr2 (1 HSPs)
chr2 (198-263)||(27277547-27277613)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Original strand, 41286351 - 41286791
Alignment:
Q  13 agaccaaacttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacagg 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41286351 agaccaaacttgccagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacagg 41286450  T
Q  113 aaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 212  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286451 aaagtgagcactcataacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 41286550  T
Q  213 gtttttgatcccctaaatatacatactattgattttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgtt 312  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41286551 gcttttgatcccctaaatatacatactattgattttagtcctcctaaaattctccatctatggaattggtccctgctgttaactcctctttaacggtgtt 41286650  T
Q  313 gatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttgctgacgtggacttttttaaagatttcctgaagaag-- 410  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  41286651 gatgtggcaacgccacatgtgcataccaaatgacgtggcactgccacatggatttttactttgctgacgtggatttttttaaagatttcctgaagaagat 41286750  T
Q  411 -aaaaataatattatcttaactaatcattgtatttggagag 450  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  41286751 caaaaataatattatcttaactaatcattgtatttggagag 41286791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 41316351 - 41316510
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 121  Q
    |||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | |    
T  41316351 ttgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatc 41316450  T
Q  122 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 181  Q
    ||||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316451 actcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 31188540 - 31188371
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 121  Q
    |||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| |    
T  31188540 ttgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatc 31188441  T
Q  122 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 191  Q
    |||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188440 actcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  25 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 124  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  125 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 177  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 41310611 - 41310769
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 121  Q
    |||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | |    
T  41310611 ttgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatc 41310710  T
Q  122 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 180  Q
    ||||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310711 actcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 41324420 - 41324578
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 121  Q
    ||||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | |    
T  41324420 ttgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatc 41324519  T
Q  122 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 180  Q
    ||||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324520 actcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  23 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 122  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  123 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 177  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 31225273 - 31225378
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 121  Q
    |||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  31225273 ttgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagc 31225372  T
Q  122 actcac 127  Q
    ||||||    
T  31225373 actcac 31225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  66 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 165  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  166 caggttagt 174  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 31178495 - 31178402
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 115  Q
    |||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178495 ttgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 41366511 - 41366666
Alignment:
Q  22 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 121  Q
    |||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | ||   | |    
T  41366511 ttgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atc 41366607  T
Q  122 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 180  Q
    ||||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366608 actcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 4209918 - 4209986
Alignment:
Q  196 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 263  Q
    |||| |||||||| ||| |||||||||||  |||||||||| ||| || ||||||||||| ||||||||    
T  4209918 atttaagggttaaatatatttttgatccctataaatatacaaactttttattttagtccctctaaaatt 4209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  68 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 167  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  168 ggttagtctacaa 180  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 2401881 - 2402029
Alignment:
Q  245 ttttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatg 344  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||| |||||| |||||||| | || | |  ||| ||| ||||||||||||||||||||    
T  2401881 ttttagtccctctaaaattcttcatttatgaaattggtccctgctgttaacttctctttaatgttgctaacatgggaacaccacatgtgcataccaaatg 2401980  T
Q  345 atgtggcactgccacatgga---tttttactttgctgacgtggacttttt 391  Q
    | |||||| | |||| || |   ||||||||||||||||||||| |||||    
T  2401981 acgtggcagt-ccacgtgaattttttttactttgctgacgtggaattttt 2402029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 2401804 - 2401870
Alignment:
Q  198 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 263  Q
    |||||||||||||||||||||  ||||| |||||||||  | | |||||||||| ||||||||||||    
T  2401804 tttagggttaattatgttttttgtccccttaaatataccaattgttgattttagcccccctaaaatt 2401870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 17545375 - 17545311
Alignment:
Q  200 tagggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaatt 263  Q
    ||||||||| |||||||||||||||  |||||||||| ||| ||  |||||||||| ||||||||    
T  17545375 tagggttaaatatgtttttgatccctataaatatacaaactttttgttttagtccctctaaaatt 17545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 42424528 - 42424446
Alignment:
Q  296 tcctctttaacggtg-ttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttgct 377  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||||  ||||| |||||| |||||||||||||||||    
T  42424528 tcctctttaaaggtgcttgacgtggcaacgccacatgtgcataccaaatgacatggcattgccacgtggatttttactttgct 42424446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 42424192 - 42424239
Alignment:
Q  343 tgatgtggcactgccacatggatttttactttgctgacgtggactttt 390  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  42424192 tgatgtggcactgctacatggatttttactttgctggcgtggaatttt 42424239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 42424638 - 42424577
Alignment:
Q  203 ggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 263  Q
    |||||||||| |||||||||||| ||||||||   ||| ||||||||||||| |||||||||    
T  42424638 ggttaattatatttttgatccccctaaatatatcaactgttgattttagtcctcctaaaatt 42424577  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 43473360 - 43473281
Alignment:
Q  291 ttaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggattttta 370  Q
    ||||||||||||||||| |  ||||||||||| ||||||||||||||| ||||||||||||| ||| || ||||||||||    
T  43473360 ttaactcctctttaacgatcctgatgtggcaatgccacatgtgcatactaaatgatgtggcaatgctacgtggattttta 43473281  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 370
Target Start/End: Complemental strand, 5021862 - 5021746
Alignment:
Q  245 ttttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatg 344  Q
    ||||||||| || ||||||||| || ||||||||||||| ||||| |||||||||||||||||||| ||        |||||||||||||||||||||||    
T  5021862 ttttagtcctcc-aaaattctctatttatggaattggtctctgctgttaactcctctttaacggtgctg--------acgccacatgtgcataccaaatg 5021772  T
Q  345 atgtggcactgccacatggattttta 370  Q
    |   |||| |||||| ||||||||||    
T  5021771 actgggcattgccacgtggattttta 5021746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 35213373 - 35213446
Alignment:
Q  197 ttttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctccat 269  Q
    |||||||||||| |||||||||| |||   |||||||||| ||| || ||||||||||| |||||||| |||||    
T  35213373 ttttagggttaaatatgtttttggtccttataaatatacaaactttttattttagtccctctaaaattttccat 35213446  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 8896019 - 8895911
Alignment:
Q  276 aattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttg 375  Q
    |||| |||||| || |||||||||||| |||| ||||||  || |||  ||| ||||||||||||||||||||||||||||||| || | ||| ||| ||    
T  8896019 aattagtccctactgttaactcctctt-aacgatgttgacatgacaataccatatgtgcataccaaatgatgtggcactgccacgtgaaatttgactgtg 8895921  T
Q  376 ctgacgtgga 385  Q
    ||||||||||    
T  8895920 ctgacgtgga 8895911  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 31311398 - 31311326
Alignment:
Q  196 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctcc 267  Q
    ||||||||||||| |||||||||| ||||  |||||||||| ||| || ||||||||||| ||||||||||||    
T  31311398 attttagggttaaatatgtttttggtccctataaatatacaaacttttcattttagtccctctaaaattctcc 31311326  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 55378742 - 55378803
Alignment:
Q  201 agggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaa 261  Q
    |||||||| |||||||||||||||  |||||||||| ||| || ||||||||||| ||||||    
T  55378742 agggttaaatatgtttttgatccctataaatatacaaacttttcattttagtccctctaaaa 55378803  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 27277547 - 27277613
Alignment:
Q  198 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 263  Q
    ||||||||||| |||||||||| ||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  27277547 tttagggttaaatatgtttttggtccccataaatatacaaacttttcgttttagtccctctaaaatt 27277613  T

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