View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15930_low_12 (Length: 454)
Name: NF15930_low_12
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_12 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Original strand, 12176815 - 12177246
Alignment:
| Q |
13 |
gaaatgaacccagaactttcaaagccaaagggtttccttttgcataagaaactagattgtttgatatctcctcatatccttctttgggaaggannnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
12176815 |
gaaatgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggattttttt |
12176914 |
T |
|
| Q |
113 |
gaaagcattcaagctgaacaacctcatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatct |
212 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12176915 |
gaaagcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatct |
12177014 |
T |
|
| Q |
213 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12177015 |
ctggttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaa |
12177114 |
T |
|
| Q |
313 |
tgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtct |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
12177115 |
tgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtaacttagaaagaagtct |
12177214 |
T |
|
| Q |
413 |
gttgtatgtgtaactgagcccatgtccctttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
12177215 |
gttgtatgtgtaactgagcccatgtctctttg |
12177246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Original strand, 12421243 - 12421674
Alignment:
| Q |
13 |
gaaatgaacccagaactttcaaagccaaagggtttccttttgcataagaaactagattgtttgatatctcctcatatccttctttgggaaggannnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
12421243 |
gaaatgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggattttttt |
12421342 |
T |
|
| Q |
113 |
gaaagcattcaagctgaacaacctcatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatct |
212 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12421343 |
gaaagcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatct |
12421442 |
T |
|
| Q |
213 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12421443 |
ctggttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaa |
12421542 |
T |
|
| Q |
313 |
tgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtct |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
12421543 |
tgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtaacttagaaagaagtct |
12421642 |
T |
|
| Q |
413 |
gttgtatgtgtaactgagcccatgtccctttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
12421643 |
gttgtatgtgtaactgagcccatgtctctttg |
12421674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 444
Target Start/End: Original strand, 12188136 - 12188567
Alignment:
| Q |
13 |
gaaatgaacccagaactttcaaagccaaagggtttccttttgcataagaaactagattgtttgatatctcctcatatccttctttgggaaggannnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12188136 |
gaaatgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgtt |
12188235 |
T |
|
| Q |
113 |
gaaagcattcaagctgaacaacctcatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatct |
212 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||| ||||||| || ||||| |||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
12188236 |
gaaagcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatct |
12188335 |
T |
|
| Q |
213 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12188336 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaa |
12188435 |
T |
|
| Q |
313 |
tgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtct |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
12188436 |
tgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtagcttagaaagaagtct |
12188535 |
T |
|
| Q |
413 |
gttgtatgtgtaactgagcccatgtccctttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
12188536 |
gttgtatgtgtaactgagcccatgtctctttg |
12188567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 444
Target Start/End: Original strand, 12432564 - 12432995
Alignment:
| Q |
13 |
gaaatgaacccagaactttcaaagccaaagggtttccttttgcataagaaactagattgtttgatatctcctcatatccttctttgggaaggannnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12432564 |
gaaatgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgtt |
12432663 |
T |
|
| Q |
113 |
gaaagcattcaagctgaacaacctcatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatct |
212 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||| ||||||| || ||||| |||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
12432664 |
gaaagcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatct |
12432763 |
T |
|
| Q |
213 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12432764 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaa |
12432863 |
T |
|
| Q |
313 |
tgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtct |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
12432864 |
tgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtagcttagaaagaagtct |
12432963 |
T |
|
| Q |
413 |
gttgtatgtgtaactgagcccatgtccctttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
12432964 |
gttgtatgtgtaactgagcccatgtctctttg |
12432995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 9393981 - 9394372
Alignment:
| Q |
13 |
gaaatgaacccagaactttcaaagccaaagggtttccttttgcataagaaactagattgtttgatatctcctcatatccttctttgggaaggannnnnnn |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||| || || || |||| || |
|
|
| T |
9393981 |
gaaatgaacccataactttcaaagccaaagagtcgccttttgcataagaaactacattatttgatatctcctcatacccctcattcggaacgattttgtt |
9394080 |
T |
|
| Q |
113 |
gaaagcattcaagctgaacaacctcatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatct |
212 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||| | ||||||||||||||| |
|
|
| T |
9394081 |
gaaagcattcaaactgaacaacctgatggagttttgaaagttcatttccttaacttgaagaatttcgtcaatccctctgcctatcaacacatgcttatct |
9394180 |
T |
|
| Q |
213 |
ctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaa |
312 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || || ||||||| |
|
|
| T |
9394181 |
ctggttgtcacaatttctctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttttaaagtatgaatgtcgtctagtacaa |
9394280 |
T |
|
| Q |
313 |
tgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaa |
404 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
9394281 |
tgaaagctttcatgtgtttgagtctttacataaccatagatgatattactttgggagtgtcaataccaagatcttccgctattaacttagaa |
9394372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 140 - 416
Target Start/End: Complemental strand, 32633728 - 32633452
Alignment:
| Q |
140 |
ggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatctctggttgtcacaatgactctgctacca |
239 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| |||||||||||| | | |||||||||||| || || || ||||||||| |||||||| |
|
|
| T |
32633728 |
ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca |
32633629 |
T |
|
| Q |
240 |
gctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttt |
339 |
Q |
| |
|
|||| || ||| ||| ||| ||||||||||| |||| |||||||| |||||| |||||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
32633628 |
tctcctagccaaccattcccgactccaatcaagttttgcagaagttccaaagtatgaacatcatctagtacaatgaaagatttcatgcgtttgagtcttc |
32633529 |
T |
|
| Q |
340 |
tcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttg |
416 |
Q |
| |
|
|||| | ||| |||| ||||||||||| || |||||| ||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
32633528 |
tcatgatcatggatggtattactttggcagattcaatatcaagatcttcccttagtaacttagaaagaagtttgttg |
32633452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 114 - 449
Target Start/End: Original strand, 6310084 - 6310419
Alignment:
| Q |
114 |
aaagcattcaagctgaacaacctcatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatctc |
213 |
Q |
| |
|
||||||||||||||||| | | | ||| ||||| || ||||| | |||||||| || ||||| ||||| ||||| | | | || ||||||||||| | |
|
|
| T |
6310084 |
aaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccc |
6310183 |
T |
|
| Q |
214 |
tggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaat |
313 |
Q |
| |
|
| || |||||||||||| ||||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | |||||||| | |||||| |
|
|
| T |
6310184 |
tagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtacatcatctattacaat |
6310283 |
T |
|
| Q |
314 |
gaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctg |
413 |
Q |
| |
|
||||| |||||||| |||||||||| |||| | ||| |||| ||||| ||||| ||| |||||| ||||||||| || |||||||| ||||||||| || |
|
|
| T |
6310284 |
gaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttg |
6310383 |
T |
|
| Q |
414 |
ttgtatgtgtaactgagcccatgtccctttgctact |
449 |
Q |
| |
|
||| |||||||| ||| |||||||| ||||| |||| |
|
|
| T |
6310384 |
ttgcatgtgtaattgatcccatgtctctttgatact |
6310419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 144 - 423
Target Start/End: Complemental strand, 13165338 - 13165059
Alignment:
| Q |
144 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
243 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||| ||||||||||| | | | | |||||||||||| || || |||||||||||| |||||||||||| |
|
|
| T |
13165338 |
ttttgggagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctc |
13165239 |
T |
|
| Q |
244 |
caaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcat |
343 |
Q |
| |
|
| | ||| |||| || ||||||||||| |||| ||||||||| | ||| | || ||||| ||||||||||||| |||||||| |||||||||| || | |
|
|
| T |
13165238 |
ctaaccaaccatgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttcatgcgtttgagtcttctcct |
13165139 |
T |
|
| Q |
344 |
aaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgt |
423 |
Q |
| |
|
| ||| |||| |||||||||| |||| |||| |||| |||| |||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
13165138 |
gatcatggatggtattactttgagagtggtaatatcaaggtcttcccctagtaacttggaaagaagtttgttgcatgtgt |
13165059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 150 - 416
Target Start/End: Complemental strand, 14405168 - 14404902
Alignment:
| Q |
150 |
gagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatctctggttgtcacaatgactctgctaccagctccaaggc |
249 |
Q |
| |
|
|||||||| | |||||||| || ||||| ||| |||||||| | | | | |||||||||||| || || ||||| |||||| ||||||||| ||| || | |
|
|
| T |
14405168 |
gagttcatcttcttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagcc |
14405069 |
T |
|
| Q |
250 |
aatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccat |
349 |
Q |
| |
|
|| |||| || ||||||||||| |||| ||||||||| || || | |||||||| ||||||||||||| ||||||||||||||||||| | | | ||| |
|
|
| T |
14405068 |
aaccatgtcccactccaatcaagttttgaagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcat |
14404969 |
T |
|
| Q |
350 |
agatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttg |
416 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||||||||| || ||||||||| ||||||||| ||||| |
|
|
| T |
14404968 |
agatggtattagtttgggactgtcaatatcaagatcttcccttagtaacttggaaagaagtttgttg |
14404902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 200 - 425
Target Start/End: Complemental strand, 5550190 - 5549965
Alignment:
| Q |
200 |
cacatgcttatctctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaaca |
299 |
Q |
| |
|
|||||| ||||| || || |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | ||| |
|
|
| T |
5550190 |
cacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtaca |
5550091 |
T |
|
| Q |
300 |
tcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaact |
399 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| | | | ||| |||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
5550090 |
tcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagtaact |
5549991 |
T |
|
| Q |
400 |
tagaaagaagtctgttgtatgtgtaa |
425 |
Q |
| |
|
||||||||||| ||||| |||||||| |
|
|
| T |
5549990 |
tagaaagaagtttgttgcatgtgtaa |
5549965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 425
Target Start/End: Original strand, 5607739 - 5607964
Alignment:
| Q |
200 |
cacatgcttatctctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaaca |
299 |
Q |
| |
|
|||||| ||||| || || |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | ||| |
|
|
| T |
5607739 |
cacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtaca |
5607838 |
T |
|
| Q |
300 |
tcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaact |
399 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| | | | ||| |||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
5607839 |
tcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagtaact |
5607938 |
T |
|
| Q |
400 |
tagaaagaagtctgttgtatgtgtaa |
425 |
Q |
| |
|
|| |||||||| ||||| |||||||| |
|
|
| T |
5607939 |
tacaaagaagtttgttgcatgtgtaa |
5607964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 425
Target Start/End: Complemental strand, 5627631 - 5627406
Alignment:
| Q |
200 |
cacatgcttatctctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaaca |
299 |
Q |
| |
|
|||||| ||||| || || |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | ||| |
|
|
| T |
5627631 |
cacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtaca |
5627532 |
T |
|
| Q |
300 |
tcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaact |
399 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| | | | ||| |||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
5627531 |
tcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagtaact |
5627432 |
T |
|
| Q |
400 |
tagaaagaagtctgttgtatgtgtaa |
425 |
Q |
| |
|
|| |||||||| ||||| |||||||| |
|
|
| T |
5627431 |
tacaaagaagtttgttgcatgtgtaa |
5627406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 425
Target Start/End: Complemental strand, 5571829 - 5571548
Alignment:
| Q |
144 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
243 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||||||||||||||| | | | | |||||| ||||| || || |||||||||||| ||||||||| || |
|
|
| T |
5571829 |
ttttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtc |
5571730 |
T |
|
| Q |
244 |
caaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcat |
343 |
Q |
| |
|
|||| ||| || | ||||||||||| | || |||||||| | || | |||||||| | ||||||||||| |||||| | |||||||| || | |
|
|
| T |
5571729 |
caagccaaccacctctcactccaatcaagtcttgcagaagttcagagttatgtacatcatctaatacaatgaaagatttcatatgtctgagtcttctctt |
5571630 |
T |
|
| Q |
344 |
aaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgtaa |
425 |
Q |
| |
|
| ||| | || |||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| ||||| | |||||| |
|
|
| T |
5571629 |
gatcatggctgggattactttgggagtgtcaatacgaagatcttcccctagtaacttggaaagaagtttgttgcacgtgtaa |
5571548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 5649914 - 5649857
Alignment:
| Q |
281 |
aagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtctt |
338 |
Q |
| |
|
||||||| ||||||| |||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
5649914 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtctt |
5649857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 5603257 - 5603314
Alignment:
| Q |
281 |
aagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtctt |
338 |
Q |
| |
|
||||||| ||||||| |||||||| | ||||| ||||||||| ||||||||||||||| |
|
|
| T |
5603257 |
aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtctt |
5603314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 5632113 - 5632056
Alignment:
| Q |
281 |
aagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtctt |
338 |
Q |
| |
|
||||||| ||||||| |||||||| | ||||| ||||||||| ||||||||||||||| |
|
|
| T |
5632113 |
aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtctt |
5632056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 13685 - 13951
Alignment:
| Q |
150 |
gagttcatttccttaacttgatgaatttcgtcaattcctcctcctgttaacacatgcttatctctggttgtcacaatgactctgctaccagctccaaggc |
249 |
Q |
| |
|
|||||||| | |||||||| || ||||| ||| |||||||| | | | | |||||||||||| || || ||||| |||||| ||||||||| ||| || | |
|
|
| T |
13685 |
gagttcatcttcttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagcc |
13784 |
T |
|
| Q |
250 |
aatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccat |
349 |
Q |
| |
|
|| |||| || ||||||||||| |||| ||||||||| || || | |||||||| ||||||||||||| ||||||||||||||||||| | | | ||| |
|
|
| T |
13785 |
aaccatgtcccactccaatcaagttttgaagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcat |
13884 |
T |
|
| Q |
350 |
agatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttg |
416 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||||||||| || ||||||||| ||||||||| ||||| |
|
|
| T |
13885 |
agatggtattagtttgggactgtcaatatcaagatcttcccttagtaacttggaaagaagtttgttg |
13951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 42265721 - 42265792
Alignment:
| Q |
13 |
gaaatgaacccagaactttcaaagccaaagggtttccttttgcataagaaactagattgtttgatatctcct |
84 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
42265721 |
gaaatgaacccagaactttcaaagccaaatggttgccttttgcataagaaactacattgtttgatatttcct |
42265792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 19492815 - 19492885
Alignment:
| Q |
292 |
tacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattact |
362 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | |||||||||| | || ||||| ||||| |||||| |
|
|
| T |
19492815 |
tacgaacatcatctagtacaatgaaagctttcattcctttgagtcttctaatgaccatggatgacattact |
19492885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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