View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15930_low_14 (Length: 406)
Name: NF15930_low_14
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 35364703 - 35364325
Alignment:
| Q |
12 |
aaagggtttcgtaattattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatggg |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35364703 |
aaagggtttcataattattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatggg |
35364604 |
T |
|
| Q |
112 |
attaaattatgcacacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35364603 |
attaaattatgcacacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatag |
35364504 |
T |
|
| Q |
212 |
tccaacaaatcatgaatggctccaatgagtatatgtaccctatgaatcttagcactgtcctggccatggatcccatggtttgattcatacattgtactgt |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
35364503 |
tccaacaaatcttgaatggctccaatgagtatatgtaccctatgaatcttagcactgttctggccatggatcccatggtttgattcatgcattgtactat |
35364404 |
T |
|
| Q |
312 |
tagttttctagatatttctctgagggattaattaagttacaatatgtctactattatgtgttaccatatcttatctctt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35364403 |
tagttttctagatatttctctgagggattaattaagttacaatatgtctactagtatgtgttaccatatcttatctctt |
35364325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 57 - 339
Target Start/End: Complemental strand, 35376422 - 35376140
Alignment:
| Q |
57 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
156 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| | |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
35376422 |
aacaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagac |
35376323 |
T |
|
| Q |
157 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatcatgaatggctccaatgagtatatgtaccctatga |
256 |
Q |
| |
|
|| ||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
35376322 |
ctttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagtgcaacagatcttgactggctccaatgagtatatgtaccctatga |
35376223 |
T |
|
| Q |
257 |
atcttagcactgtcctggccatggatcccatggtttgattcatacattgtactgttagttttctagatatttctctgagggat |
339 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||||||||||| ||||| ||| |||||||| |||| |||||||| |||||| |
|
|
| T |
35376222 |
atctaagcactgttctcgccatggatcccatagtttgattcatgcattgcactattagttttttagacatttctctcagggat |
35376140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 35357867 - 35357627
Alignment:
| Q |
57 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
156 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| | || | || ||| |||||| | | || |||||| || |||| ||||||| ||||||| || |
|
|
| T |
35357867 |
aacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgcccaaatcgaaac |
35357768 |
T |
|
| Q |
157 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatcatgaatggctccaatgagtatatgtaccctatga |
256 |
Q |
| |
|
|| ||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||| || | | ||| ||||| ||||||| ||||||||| |
|
|
| T |
35357767 |
ctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaacagatgttcattggatccaacctgtatatgaaccctatga |
35357668 |
T |
|
| Q |
257 |
atcttagcactgtcctggccatggatcccatggtttgattc |
297 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
35357667 |
atcttagcactgttctcgccatggattccatggtttgattc |
35357627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University