View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_17 (Length: 391)
Name: NF15930_low_17
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 173 - 381
Target Start/End: Original strand, 24355736 - 24355944
Alignment:
| Q |
173 |
gaatccagcagaagcaatttgaaacagcccaattacaattttaagtcgcaggttgtattaaaatcaaaccgagttattaaccaggattgaaaagcataat |
272 |
Q |
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| T |
24355736 |
gaatccagcagaagcaatttgaaacagcccaattacaattttaagtcgcaggttgtattaaaatcaaaccgagttattaaccaggattgaaaagcataat |
24355835 |
T |
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| Q |
273 |
gtttttcttaaaccaaaattgatatgctaaagcatactctgatagctgacatcccggctatattgacacctcatgcgaaacttggtcgattagacatact |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24355836 |
gtttttcttaaaccaaaattgatatgctaaagcatactctgataactgacatcccggctatattgacacctcatgagaaacttggtcgattagacatact |
24355935 |
T |
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| Q |
373 |
tgacctttg |
381 |
Q |
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||||||||| |
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| T |
24355936 |
tgacctttg |
24355944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 24381090 - 24381275
Alignment:
| Q |
181 |
cagaagcaatttgaaacagcccaattacaattttaagtcgcaggttgt-------attaaaatcaaaccgagttattaaccaggattgaaaagcataatg |
273 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24381090 |
cagatgcaatttgaaacaacccaattacaattttaagtcgcaggttgtcggttgcattaaaatcaaaccgagttattaaccaggattgaaaagcatcatg |
24381189 |
T |
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| Q |
274 |
tttttcttaaaccaaaattgatatgctaaagcatactctgatagctgacatcccggctatattgacacctcatgcgaaacttggtc |
359 |
Q |
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| T |
24381190 |
tttttcttaaaccaaaattgatatgctaaagcatactatgataactgacatcccggctatattgacacctcacatgaaacttggtc |
24381275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 24355582 - 24355663
Alignment:
| Q |
19 |
tgaaaaggcaagcaaaagagaaacatacaagccaaaagtgtcaaagacagtaactacacccaaaccaaaactagcacatgct |
100 |
Q |
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| T |
24355582 |
tgaaaaggcgagcaaaagagaaacatacaagccaaaagtgtcaaagacagtaactacacccaaaccaaaactagcacatgct |
24355663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 24379859 - 24379902
Alignment:
| Q |
53 |
aaagtgtcaaagacagtaactacacccaaaccaaaactagcaca |
96 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
24379859 |
aaagtctcaaagacagttactacacccaaaccaaaactagcaca |
24379902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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