View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15930_low_2 (Length: 666)
Name: NF15930_low_2
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Complemental strand, 44384476 - 44383835
Alignment:
| Q |
1 |
ttatacggtggtcgagattcaaacatcaaactctttacttctttgtatttaaaatgtgtgattttcagccactgtatcactagattacttnnnnnnnnct |
100 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| |||| || || |
|
|
| T |
44384476 |
ttatacaggggttgagattcaaacatcaaactctttacttttttgcatttaaaatgtgtgattttcagccactaaaccactatattatttaaaaaaaact |
44384377 |
T |
|
| Q |
101 |
taaaggagataaaaaagttcaacttatatatgaattgtatgaaaatatttaagttgagccatcaactacctacattccaaacaaaatatctcgtatcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
44384376 |
taaaggagataaaaaagttcaacttat----gaattttatgaaaatatttaagttgagccatcagctac----attccaaacaaaatatctcgtatcatt |
44384285 |
T |
|
| Q |
201 |
taatgtgtatgaaaaattattgaataaacaaaaacaaaaatagtattcatagtctacagtttacatatctccacgaaagtgacaatatatacatgtaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384284 |
taatgtgtatgaaaaattattgaataaacaaaaacaaaaatagtattcatagtctacagtttacatatctccacgaaagtgacaatatatacatgtaagt |
44384185 |
T |
|
| Q |
301 |
tcgatgacattattaattggtgtcccttctgaagctttggttctcctccaattacccctctacttgagatgtgatcatagactttgggaaaatgacaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384184 |
tcgatgacattattaattggtgtcccttctgaagctttggttctcctccaattacccctctacttgagatgtgatcatagactttgggaaaatgacaact |
44384085 |
T |
|
| Q |
401 |
tatcttaacatttaagactatatggtcccatgttatgtcttttaaccaaactcactaagttaataatgctgatcaaaatagtttatttggttccactact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384084 |
tatcttaacatttaagactatatggtcccatgttatgtcttttaaccaaactcactaagttaataatgctgatcaaaatagtttatttggttccactact |
44383985 |
T |
|
| Q |
501 |
gcacttaaaacttattagttaagctatctacatagaatagttctttttggcaaatatatactgttttaagtagttaacaaaagtccaaatttagtgggtg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44383984 |
gcacttaaaacttattagttaagctatctacatagaatagttctttttggcaaatatatactgttttaagtagttaacaaaagtccaaatttagtgggtg |
44383885 |
T |
|
| Q |
601 |
caaggttaattctcttaagtcaaaaagatatatacaccaaacctaatcat |
650 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44383884 |
caaggttaattctcttaagttaaaaagatatatacaccaaacctaatcat |
44383835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 3712408 - 3712440
Alignment:
| Q |
29 |
aactctttacttctttgtatttaaaatgtgtga |
61 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
3712408 |
aactctttacttctttatatttaaaatgtgtga |
3712440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University