View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15930_low_22 (Length: 318)

Name: NF15930_low_22
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15930_low_22
NF15930_low_22
[»] scaffold0302 (1 HSPs)
scaffold0302 (21-165)||(18099-18243)
[»] chr2 (2 HSPs)
chr2 (21-169)||(26329912-26330060)
chr2 (167-263)||(26330117-26330221)
[»] chr1 (2 HSPs)
chr1 (18-92)||(18124441-18124515)
chr1 (30-144)||(18132778-18132892)
[»] chr7 (3 HSPs)
chr7 (20-142)||(35932673-35932795)
chr7 (17-165)||(35980662-35980807)
chr7 (17-165)||(36002074-36002219)
[»] chr5 (2 HSPs)
chr5 (45-93)||(4805806-4805854)
chr5 (271-303)||(5402240-5402272)


Alignment Details
Target: scaffold0302 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 18243 - 18099
Alignment:
Q  21 atgaatttgcaagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaatgctgcacaacaactcacttcccttga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18243 atgaatttgcaagcatgaaccatcttcaaactttgggttttcattattgtgacaatttgaagtttttcttcaacgctgcacaacaactcacttcccttga 18144  T
Q  121 aacattgtttgttcaatcatgtgggagcttagaggtcttacctct 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18143 aacattgtttgttcaatcatgtgggagcttagaggtcttacctct 18099  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 26329912 - 26330060
Alignment:
Q  21 atgaatttgcaagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaatgctgcacaacaactcacttcccttga 120  Q
    |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||    
T  26329912 atgaatttgcaagcatgcaccatcttcaaactttgggttttcattattgtgacaatttgaagtttttcttttacgctgcacaacaactcgcttcccttga 26330011  T
Q  121 aacattgtttgttcaatcatgtgggagcttagaggtcttacctctatat 169  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26330012 aacattgtttgttcaatcatgtgggagcctagaggtcttacctctatat 26330060  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 26330117 - 26330221
Alignment:
Q  167 tatgtaatgaatgcccaatcacaaagctgagcttgacg-------tgtatcttggggattttccaagtcttttg-cgttgcctcattgaattttaggtga 258  Q
    |||||||||||||||||||||||||  | ||||||| |       ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||     
T  26330117 tatgtaatgaatgcccaatcacaaacttaagcttgatgaaacatctgtatcttggggattttccaagtcttttgacgttgcctcattggattttaggtgc 26330216  T
Q  259 ttcaa 263  Q
    |||||    
T  26330217 ttcaa 26330221  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 18124515 - 18124441
Alignment:
Q  18 ataatgaatttgcaagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttca 92  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||| | ||||||||||||||||| ||| ||||    
T  18124515 ataatgaatttgcaagcttgaacaatcttcatactttgggttttcatttttgtgacaatttgaagtatttattca 18124441  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 18132892 - 18132778
Alignment:
Q  30 caagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaatgctgcacaacaactcacttcccttgaaacattgtt 129  Q
    ||||| |||| ||||||| ||  ||||||||||| ||||| |||||||||||| |||||||||  |  | |||||||||| |||||||||| |||||||     
T  18132892 caagcttgaagcatcttcgaaagttgggttttcattattgcgacaatttgaagcttttcttcagcggggaacaacaactcccttcccttgagacattgta 18132793  T
Q  130 tgttcaatcatgtgg 144  Q
    |||| ||||||||||    
T  18132792 tgttaaatcatgtgg 18132778  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 35932795 - 35932673
Alignment:
Q  20 aatgaatttgcaagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaatgctgcacaacaactcacttcccttg 119  Q
    ||||||||||||||| | || ||||||||||||| ||  ||| | | |||||| |||||||||||| | ||||| |   || ||||||| ||||||||||    
T  35932795 aatgaatttgcaagcttcaagcatcttcaaacttaggaattttattgttgtgaaaatttgaagtttctgttcaacgggtcaaaacaacttacttcccttg 35932696  T
Q  120 aaacattgtttgttcaatcatgt 142  Q
    |||| ||| ||||||||||||||    
T  35932695 aaacgttgattgttcaatcatgt 35932673  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 35980807 - 35980662
Alignment:
Q  17 aataatgaatttgcaagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaatgctgca--caacaactcacttc 114  Q
    |||||||||||||||||  |||||||||||  ||||||||||||| | | |||| |||||||||||||||| || |     |||   | |||||| | ||    
T  35980807 aataatgaatttgcaagaatgaaccatcttagaactttgggttttgattgttgtcacaatttgaagtttttattta-----gcaaggatcaactcccatc 35980713  T
Q  115 ccttgaaacattgtttgttcaatcatgtgggagcttagaggtcttacctct 165  Q
    |||||||||||||||||||  ||||||||||||| | |||  |||||||||    
T  35980712 ccttgaaacattgtttgttgtatcatgtgggagcctggagtccttacctct 35980662  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 36002219 - 36002074
Alignment:
Q  17 aataatgaatttgcaagcctgaaccatcttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaatgctgca--caacaactcacttc 114  Q
    |||||||||||||||||  |||||||||||  ||||||||||||| | | |||| |||||||||||||||| || |     |||   | |||||| | ||    
T  36002219 aataatgaatttgcaagaatgaaccatcttagaactttgggttttgattgttgtcacaatttgaagtttttattta-----gcaaggatcaactcccatc 36002125  T
Q  115 ccttgaaacattgtttgttcaatcatgtgggagcttagaggtcttacctct 165  Q
    |||||||||||||||||||  ||||||||||||| | |||  |||||||||    
T  36002124 ccttgaaacattgtttgttgtatcatgtgggagcctggagtccttacctct 36002074  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 4805854 - 4805806
Alignment:
Q  45 ttcaaactttgggttttcactattgtgacaatttgaagtttttcttcaa 93  Q
    |||| |||||||||||| | |||||| |||||||||||||||| |||||    
T  4805854 ttcacactttgggtttttattattgtcacaatttgaagtttttgttcaa 4805806  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 5402240 - 5402272
Alignment:
Q  271 ttcaatgacaccaatttggttacaacccttcat 303  Q
    ||||||||||||||||||||| |||||||||||    
T  5402240 ttcaatgacaccaatttggttccaacccttcat 5402272  T

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