View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_24 (Length: 293)
Name: NF15930_low_24
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 49313463 - 49313197
Alignment:
| Q |
18 |
accaattaattttgctacaagtgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaaccgtgaatactagtccgacaatgacttctggt |
117 |
Q |
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| T |
49313463 |
accaattaattttgctacaagtgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaactgtgaatactagtccgacaatgacttctggt |
49313364 |
T |
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| Q |
118 |
gttccgcaaaattctattggaatgcttccaacttcatcaccaacaacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49313363 |
gttccgcaaaattctattggaatgcttccaacttcatcaccaacaacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcaca |
49313264 |
T |
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| Q |
218 |
agccaattcttgatattcttcatgggctgtggtgttatcttccaattatctagtactttcttcttct |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49313263 |
agccaattcttgatattcttcatgggctgtggtgttatcttccaattatctagtactttcttcttct |
49313197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 29915131 - 29914868
Alignment:
| Q |
18 |
accaattaattttgctacaagtgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaaccgtgaatactagtccgacaatgacttctggt |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
29915131 |
accaattaattctgctacaagtgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaactatgaatactggtccgacaatgacttctggt |
29915032 |
T |
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| Q |
118 |
gttccgcaaaattctattggaatgcttccaacttcatcaccaacaacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcaca |
217 |
Q |
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| T |
29915031 |
gttccacaaaattctattggaatgcttgcagcttcatcaccaacaacttccatggtaaaatccttttatgagattattttgcttaagtaaacgcatcaca |
29914932 |
T |
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| Q |
218 |
agccaattcttgatattcttcatgggctgtggtgttatcttccaattatctagtactttcttct |
281 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
29914931 |
agccaattcttgatattcttcataggctgtggtgttatcttccaattatctagtaatttcttct |
29914868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 260
Target Start/End: Complemental strand, 6661208 - 6661010
Alignment:
| Q |
62 |
attcagcgaggggaacaaattcaaccgtgaatactagtccgacaatgacttctggtgttccgcaaaattctattggaatgcttccaacttcatcaccaac |
161 |
Q |
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|||||||||||||||| || |||| || || ||| |||| |||||||| | ||| || |||||| |||| ||||||| |||||| ||||||||||| | |
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| T |
6661208 |
attcagcgaggggaacggatgcaactgttaacactggtccagcaatgactgccggtcttacgcaaagttctgttggaatacttccagcttcatcaccagc |
6661109 |
T |
|
| Q |
162 |
aacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcacaagccaattcttgatattcttcatgggctgtggtgttatcttcc |
260 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||| ||||||||||||||| || |||| |||||||||||||| |
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| T |
6661108 |
aacttccatggtaaattccttttatgagattatttctcttaactaaacaaatcataagttaattcttgatattctccagtggctttggtgttatcttcc |
6661010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 19290703 - 19290760
Alignment:
| Q |
113 |
ctggtgttccgcaaaattctattggaatgcttccaacttcatcaccaacaacttccat |
170 |
Q |
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||||| ||||||||| |||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
19290703 |
ctggtcttccgcaaagttctgttggaatgcttccagcttcatcaccagcaacttccat |
19290760 |
T |
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