View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15930_low_27 (Length: 263)
Name: NF15930_low_27
Description: NF15930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15930_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 7999676 - 7999912
Alignment:
| Q |
18 |
aaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattg |
117 |
Q |
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| T |
7999676 |
aaatgcaaaccgaaaaagtgtcgtcaagagtgcaagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattg |
7999775 |
T |
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| Q |
118 |
cttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattattattctattcattaacttttttaaagatgctcgcttttgttaatac |
217 |
Q |
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| T |
7999776 |
cttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattattattctattcattcacttttttaaagatgctcgcttttgttaatac |
7999875 |
T |
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| Q |
218 |
ttaataatgaataatgggtttggtttatgtgatgatg |
254 |
Q |
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| T |
7999876 |
ttaataatgaataatgggtttggtttatgtgatgatg |
7999912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 7908900 - 7908721
Alignment:
| Q |
18 |
aaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtccaagattg |
117 |
Q |
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| T |
7908900 |
aaatgcagaccgctaaagtgtcatcaagagtgccagatgatttgtcctgtcgtcataattggaaaatcatgtgttgaggttactcctgagtccaagattg |
7908801 |
T |
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| Q |
118 |
cttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatta-ttattc--tattcattaactttttta |
194 |
Q |
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| T |
7908800 |
cttacatatctgaggaattgtgcattggatgccgtatgtgtgttaaggtattatttattcattattcattcactttttta |
7908721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 51514830 - 51514924
Alignment:
| Q |
78 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattatt |
172 |
Q |
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| T |
51514830 |
ggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
51514924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 51514658 - 51514717
Alignment:
| Q |
20 |
atgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccgg |
79 |
Q |
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| T |
51514658 |
atgcaaacccaaaaagtgtcgtcaagaatgtaagaagagttgtcctgtcgtcagaaccgg |
51514717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 1304674 - 1304583
Alignment:
| Q |
78 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatt |
169 |
Q |
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| T |
1304674 |
ggaaaattgtgtattgaggttaattctgcatcgaagattgcttacctatccgaggaattgtgcaatggatgtggtatttgtgttaaggtatt |
1304583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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